Mtil014599.1
Basic Information
- Insect
- Mimas tiliae
- Gene Symbol
- Zeb1
- Assembly
- GCA_905332985.1
- Location
- HG995266.1:3045011-3057382[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.8 1.3e+02 3.8 2.2 1 22 228 249 228 251 0.89 2 11 0.019 1.3 10.0 4.0 1 23 258 280 258 280 0.97 3 11 0.047 3.2 8.8 1.5 2 23 285 306 284 306 0.96 4 11 1.2 83 4.3 0.2 2 23 311 333 310 333 0.93 5 11 2.1e-06 0.00014 22.5 1.0 1 23 336 359 336 359 0.97 6 11 0.0019 0.13 13.1 2.5 1 20 364 383 364 386 0.95 7 11 0.012 0.85 10.6 0.1 3 21 398 416 397 421 0.92 8 11 1.1e-05 0.00079 20.1 0.2 2 23 432 454 431 454 0.96 9 11 0.73 50 5.0 1.7 1 23 460 483 460 483 0.94 10 11 2.3e-06 0.00016 22.3 0.4 3 23 494 514 493 514 0.98 11 11 5.6e-06 0.00039 21.1 1.9 1 23 520 543 520 543 0.96
Sequence Information
- Coding Sequence
- ATGAACTACTTTGAGGAGATTAATTTAAATAACGTGAATATAAAAAATCCTATATATTGCCAAGCATGTCTCAGTTCGGATAGAGCACTTTTTATTTTAGGTGACTACGTTGAATTATTTAGAAAAATATGTGACTATTCATTTACGGTGTCTCCAATGCATAAATCTCTATGCTGGGAGTGCATAGCTATGCTGAGGAAGTTGCACCTTTTTAAAACAAGAGCCAACAAGGCACAGAAAATATTAAATAATCAAATTACTAACAAACAGTATACTCAACAAAATTCATTGTCAAACTTAACTATCTGCTCAGCTAATCAAATAATAGATGTAATATATGAGGAAAAACCTGAAATACCCACACATGAAGAAGAAATAGAAATAAAAAACGAAGATGAAATCGAAGATTACGAGCCAGAAATTAAACAAGAAATCGAAATGGACGTAGTAGAGGGTTATCATGAAACAGATTCCTCTGACAATGATATAAAAGAGGTATTAAATCAAATTAAAATAAAACAAGAATCAAAATTAACACTCAAACGTACAAACAGAAAGAAATATCACAAATTAGTTTTTGATAAACATGAAATTGTTAGGAAGAGTGTCAGGATAGATTTTGAACAGGCGAAATGTTGGATGGAGAGAGACAGAAATAGTGATAGTTTGAAAGTATTTCAATTTAAATGCATGAAATGTCTTTATGTTTGGAAATCGAAGAAACAATTGAAAGAACATAACGGAAAATATCATAGTGAGTCCAGCGGCCCATACTTTTGTGACATGTGTTCATCTCGGTTCAAACAAAAGTCATATCTACAGTTTCACTTAAAATCACACAGCAAGGGTCTACAGTGCTCCATGTGTGGTTACAATTGTTATTCAACAAGTGTTATGAAAGTTCATTTGAAAGGCCATAAGAGTGAGGTGCAATGCCTTATCTGTGATGTGAAGATTCAAAATATTTCGTTATTTAACCAACATTACAAGGACATGCATAACTCTTTTGTATGTGATATCTGCGGCAAGCGAACCAGGTTCAAACGCATGCTAGAACGACATATGAGGAATGTTCACAATTTCGCCACATTCGAGTGTAAGCAATGTAATAGAAAGTACAAAACTGGTCATAATCTAAGAAATCACGTGTGGTTGCATCACTCGACGCTGACGAACGTGGAGCTCGCGTACTGTGTAACGTGCGACAAACAGTTCGACACGGCCGCTTTGTACAGACAGCATGTCAAGTACGCCGCCATACACGCCGCCGAGAGGACTTGCATACCACAAGTACAGTGTCCCGAATGTCCCAAAGTGTACGCGCGGAGGACCAATATGATGAATCATTACAGATATGTTCACATGAAGAAGACGAAGTATTATTGTTCGCTGTGTGACCAGTATTTCCTGAACAGTACGAAGTACGTTGAACACGTGAAATACAATCATCAAGGTGTTGTTAGGGAGAAGAATAAAATATGCACCATCTGCGGACGAGGATTTAATGTAAACAAAACGCTAATAAATCATATGAGGACACATACAGGCGAGCGACCGTATGAGTGTCCGCATTGTGATAGACGATTCACGCAACAATATGCGATGAAGATGCACGTGAAGAATGTACACGGGAAACGGAAGGGGATCAGCTAA
- Protein Sequence
- MNYFEEINLNNVNIKNPIYCQACLSSDRALFILGDYVELFRKICDYSFTVSPMHKSLCWECIAMLRKLHLFKTRANKAQKILNNQITNKQYTQQNSLSNLTICSANQIIDVIYEEKPEIPTHEEEIEIKNEDEIEDYEPEIKQEIEMDVVEGYHETDSSDNDIKEVLNQIKIKQESKLTLKRTNRKKYHKLVFDKHEIVRKSVRIDFEQAKCWMERDRNSDSLKVFQFKCMKCLYVWKSKKQLKEHNGKYHSESSGPYFCDMCSSRFKQKSYLQFHLKSHSKGLQCSMCGYNCYSTSVMKVHLKGHKSEVQCLICDVKIQNISLFNQHYKDMHNSFVCDICGKRTRFKRMLERHMRNVHNFATFECKQCNRKYKTGHNLRNHVWLHHSTLTNVELAYCVTCDKQFDTAALYRQHVKYAAIHAAERTCIPQVQCPECPKVYARRTNMMNHYRYVHMKKTKYYCSLCDQYFLNSTKYVEHVKYNHQGVVREKNKICTICGRGFNVNKTLINHMRTHTGERPYECPHCDRRFTQQYAMKMHVKNVHGKRKGIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -