Mtil014425.1
Basic Information
- Insect
- Mimas tiliae
- Gene Symbol
- -
- Assembly
- GCA_905332985.1
- Location
- HG995266.1:736216-747755[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3e-05 0.0021 18.8 0.7 1 23 157 180 157 180 0.97 2 11 3.9e-05 0.0027 18.5 1.1 2 23 188 209 188 209 0.97 3 11 4.6 3.2e+02 2.5 7.2 1 23 213 235 213 235 0.97 4 11 1.1e-06 7.7e-05 23.3 2.8 1 23 240 263 240 263 0.98 5 11 0.0074 0.51 11.3 1.2 3 23 270 291 270 291 0.95 6 11 1.1 73 4.5 0.1 3 20 302 319 300 320 0.93 7 11 0.00059 0.041 14.7 1.4 3 23 330 350 329 350 0.96 8 11 2.6e-05 0.0018 19.0 0.6 1 23 359 382 359 382 0.97 9 11 1.8e-05 0.0012 19.5 2.4 1 23 392 414 392 414 0.98 10 11 9.2e-07 6.4e-05 23.6 2.8 1 23 420 442 420 442 0.98 11 11 0.00028 0.019 15.8 0.1 1 23 448 470 448 470 0.96
Sequence Information
- Coding Sequence
- ATGCCAAACCAATTTCATCCGTACAATATATCAAAAATGTACACCACAGACTACCCAGAAGTACCCAGCTTACTGGAAGATAACATTGATTGTAAAACTGACATGACCAACATACCATCAATCAAAACTGAGGTGGAAACTGACATTATACCAGAACATGAAATCAAAGTTGAAAGTATTGATGTTGATTTAATAGAAACACCGGAAAAGCAACACCGGAAAAACCAATACAAAAGAAAAAACCTAAAGAAAAGAGAAAGATTAAAAGGAAAAAAAAAAGATTCGAGAAAGGAATCAAGTGACGAAATGGAAGATTACATTCCTGTGTTCAAACAAAAAGGAAGATACTTTGAAACAAAAGAGAATATGACGAATTTTCAAAAGATTTTCGATTGTGACATCAAAGTGTTGAGTATGGAAGAACAAATGCAGGATATTAAAGAGCGGAAAGATGGTTTGAACTATCCATATAAATGCGGTGATTGTTATAAAGGGTTCATGAATGAGGAGAATTTGACAAAGCATAATCAAACTTGGCATGATCCGAGCCGAGGCGTCGCCGTTTGCGACGTGTGCAAAATGCGATATAAAGACCAGCGAGATCTGAACAGACATCTCAAAAGCCACAGACTCAAGTTTACATGCAGGCAATGCAAACACGTCTGTAAAAACACGTCTAAAGCAATGGAACACTTCAAGATGCACGGAGGCCAAGTGTACAAATGTGATCATTGTGGGAAAACTTACGAGAAGCAATCAACGTATCTAACTCACATGCGGGTCGTCCATCCGTCAGCGTTGATATGGTGCGAACTGTGCGGAGAGTCTTTCGTCTCAAATTTTGGACTCAACGGACACAAAAAACATTCCCATAAAGAGTTACAATACCCACCAGAATCTATTTGTGGCAAATGTAACGCCCAATTCTTGAACACTGATGCTCTAAAGCGCCATACAGACGGCGCGGGTTGTGAATCGGTCGCGAGTTGCGTACACTGTGGAGAGGGTTTTACAACACGATTGTTGTTGAAGGACCATCTGTTCACACATCGGCCTGGGATTGTTTTGGGACATTTCCCCTGTGTTAAGTGTAACAAGGTGTTCCCCCGTCAGAATCTATACAGCGCTCACTACAGGCGAGTCCACGCCGACATCACACGAGGGAAGAAAACGTTCATGTGCGAGCTGTGCGGGAAGTCGCTACCGAATAAATGCGAGCTTCGGTATCACCAACGCACCCACACTGGAGAGAGGCCGTTCGTCTGTACGCACTGTTCTAAGAGTTTTGTCAAGAAAGCTTTTTTGAAGGCTCACATGCGAGTGCATTCGACGGATCGTCCGTTCGCTTGTAAGTTATGTCCGAAAACTTTCAAAGGACCCGCCGCGTTGAGTGGACATCAATATGTACACACGGGAATCAAACCTCCAGTGCGAAGAAAAAAGAAACTGCCCTCGGTCATAGACTCTGCAGAATGA
- Protein Sequence
- MPNQFHPYNISKMYTTDYPEVPSLLEDNIDCKTDMTNIPSIKTEVETDIIPEHEIKVESIDVDLIETPEKQHRKNQYKRKNLKKRERLKGKKKDSRKESSDEMEDYIPVFKQKGRYFETKENMTNFQKIFDCDIKVLSMEEQMQDIKERKDGLNYPYKCGDCYKGFMNEENLTKHNQTWHDPSRGVAVCDVCKMRYKDQRDLNRHLKSHRLKFTCRQCKHVCKNTSKAMEHFKMHGGQVYKCDHCGKTYEKQSTYLTHMRVVHPSALIWCELCGESFVSNFGLNGHKKHSHKELQYPPESICGKCNAQFLNTDALKRHTDGAGCESVASCVHCGEGFTTRLLLKDHLFTHRPGIVLGHFPCVKCNKVFPRQNLYSAHYRRVHADITRGKKTFMCELCGKSLPNKCELRYHQRTHTGERPFVCTHCSKSFVKKAFLKAHMRVHSTDRPFACKLCPKTFKGPAALSGHQYVHTGIKPPVRRKKKLPSVIDSAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00063807;
- 90% Identity
- -
- 80% Identity
- -