Basic Information

Gene Symbol
nfxl1
Assembly
GCA_018340805.1
Location
JACMZG010001908.1:62482888-62499343[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 3 4e+04 -4.8 1.9 15 19 171 175 171 175 0.85
2 19 0.28 3.6e+03 -0.8 0.8 4 10 206 212 205 212 0.94
3 19 2.3e-08 0.0003 21.8 16.9 1 19 220 237 220 237 0.99
4 19 3 4e+04 -4.1 1.0 6 10 262 266 261 266 0.86
5 19 0.00096 13 7.1 15.1 3 18 274 289 272 290 0.91
6 19 1.4 1.9e+04 -3.1 1.5 6 10 315 319 314 319 0.90
7 19 9.6e-06 0.13 13.4 10.4 1 19 325 344 325 344 0.96
8 19 0.00014 1.9 9.7 11.0 1 18 379 396 379 397 0.96
9 19 2.3e-05 0.3 12.3 15.8 1 18 431 448 431 449 0.94
10 19 4.5e-10 5.9e-06 27.3 13.9 1 19 458 476 458 476 0.98
11 19 3 4e+04 -5.0 2.0 10 13 483 486 482 487 0.72
12 19 0.76 1e+04 -2.2 1.0 5 10 503 508 503 508 0.94
13 19 3 3.9e+04 -4.1 5.5 10 19 524 533 521 536 0.79
14 19 0.0031 42 5.4 6.0 1 12 542 552 542 552 0.95
15 19 1.1 1.5e+04 -2.7 5.8 14 18 581 585 581 586 0.89
16 19 0.0031 41 5.4 5.3 1 11 622 632 612 633 0.90
17 19 2.9 3.8e+04 -4.1 1.3 6 10 646 650 645 650 0.85
18 19 0.0053 70 4.7 11.5 4 19 658 673 656 673 0.92
19 19 2.7 3.6e+04 -4.0 0.9 14 18 711 718 711 719 0.71

Sequence Information

Coding Sequence
ATGGATAAAAATCGCAGTAATCCGTGGAACAGAGGGGGTAGAGGTGGCGGAGGAAGCAGACAACCCAACAAAGCTTCCAATGGCAACTTAGCCAGGCAAGTTCAAGTTGTATCTGGAGAAGCTAAATTCAGGGAAGCACAGGAAAGAATGCAGAAATctgtaaagaaatatttagaaaatgaatATGAGTCTTCTGAGGAAGAAGAGGAACTTGAAACTCAACCTATATTTGATTCAGTATTAAAGTCATATTCACAGTTAGGAGGAGAAGTGAGGGATCTAGAAAGGACTCAGTCCCATCTTGAGAACACATTCCAGTCTGGATCAGCTTTGTGTCTTATCTGCATTGCTACTGTTAGGCGAGCTGACCAGatcTGGAGCTGCCTGTCTTGTTTTGGTTTCTTTCATTTAAACTGCATACAGAGATGGGCTAAAGATAGTTTAGCTCAGCAGAAACTAATTGCTGATGATAGACCTTCCGCTAAAACTGCCCTCGTATTCAAATGGCTTTGCCCAAAGTGCCGAGAGGAGTACGAGCCAGATAAGATACccaagaaatatatttgtttctgtGGTCAGACAGAGGACCCTGAGTACCAGCAGTGGTTAGTTCCTCATTCATGCGGAGAGAAGTGCAGTAAGCCACTGAAGCCTCTGTGTGGACACACTTGTTTGCTACTTTGTCATCCTGGTCCATGCCCTCCCTGCCCTAAGGTAGTTGAGTCTAGGTGTTTCTGTAAAAGTGAAACAAAGAAATTACGATGTTCACACAAAGAATGGTcttgtaataaaaagtgtacACTGCTGCTAGAGTGTAAAAAACACAAGTGTAATACCCAGTGCCACCAGGCTCCTTGTCCACCCTGTGATAAGACTGAACTGTTTAGTTGCTTGTGTGGCAATAAAACCAAGAGGATACCCTGCGCTCAGCTCTCATGGCAATGTGAGAAGATTTGTGGTAAAAAATTATCATGTGGTTTACACATTTGTGAAAGAGTTTGTCATGTGGCTAATGAATGTGGTCCATGCCCACGAAGTGAACCCCGATCGTGTCCGTGTGGTAAATCTATACAGATCCTACCCTGTGAGCAGGATGTCCAGACTTGTGGAGGTACATGTGATAAAATATTGGACTGTTCACTTCATAGGTGCCCTCAGAGGTGCCATAACTCTTCTTGTGGAACTTGTTTAGAGATAGTTGTGAAGACATGCAGGTGTGGACTAAACAGTAAGGAAGTGAGCTGTAGTAAGGATTATCTCTGTGAGGTCAAATGCAAGCGAATGAGAGACTGCAACATACATCCTTGCAACAGAAAGTGTTGTGATGGAAACTGCCCCCCGTGTGAGAAGCTATGCAACTCAACTCTGAGCTGTGGCAAACACAAGTGCAACTCAGTGTGCCACAGAGGACCATGTTACCCATGCCAACTTACCAAACCTCTGTCGTGTCACTGTGGCCAGACCACTGTCATTATTCCTTGTGTGAAGAGGAAAATCCGTCCACCCAAGTGTAATAAACTATGCAGGATTCCTCCTGATTGTGAACATGAGAGTCGAGAGAAGCACAGATGTCATTTTGATACTTGCCCTGCATGCAAACAGATATGTGGAAAGACATTAGAGTGTGGACATGTATGTCCTGCTGTATGTCATACTGCTGTCTTGGCTATATCTCAGCAATCTGCTAAACCTGCTACACCTTGTGACCTGGTTAATGTGTGCCTTGAGAGGAAGAAATTGCCATGCCCTCCATGCAATGTCCCTGTGGAGGTAACATGCCTGGGACAACATGAAACTATATATGTACCGTGTCATGGTGCTGTACCGAGGAGCTGTGGTAGACCTTGTGGGAGGAGGCTGGATTGCACTAATCATGTCTGTCAGCTCCCCTGTCACGTTCCTTTTGATGAGACTGGTGAGAAATTGTGTGAGGAATGTGAACGTAGCTGTGAACTGAGTCGACCGTGTGACCACGAGTGCAAGAGATGGTGTCATCCTTCTCCTTGTGCTGACTGTAAAATTACCATGAAAATGCAGTGTCATTGTGCACTTACCAATGTATTTGTCAAGTGCTTTGAGTGGCAGTCAGCTGACCAAGAAAAGAGGAATGAATTGTTATCCTGTGGCAATAATTGCCCCAAATTGgcACCGTGTAAAATAAAGAACAGAAGAGGCACTTGTGGCTCGTCTGATATAGTGAAATAG
Protein Sequence
MDKNRSNPWNRGGRGGGGSRQPNKASNGNLARQVQVVSGEAKFREAQERMQKSVKKYLENEYESSEEEEELETQPIFDSVLKSYSQLGGEVRDLERTQSHLENTFQSGSALCLICIATVRRADQIWSCLSCFGFFHLNCIQRWAKDSLAQQKLIADDRPSAKTALVFKWLCPKCREEYEPDKIPKKYICFCGQTEDPEYQQWLVPHSCGEKCSKPLKPLCGHTCLLLCHPGPCPPCPKVVESRCFCKSETKKLRCSHKEWSCNKKCTLLLECKKHKCNTQCHQAPCPPCDKTELFSCLCGNKTKRIPCAQLSWQCEKICGKKLSCGLHICERVCHVANECGPCPRSEPRSCPCGKSIQILPCEQDVQTCGGTCDKILDCSLHRCPQRCHNSSCGTCLEIVVKTCRCGLNSKEVSCSKDYLCEVKCKRMRDCNIHPCNRKCCDGNCPPCEKLCNSTLSCGKHKCNSVCHRGPCYPCQLTKPLSCHCGQTTVIIPCVKRKIRPPKCNKLCRIPPDCEHESREKHRCHFDTCPACKQICGKTLECGHVCPAVCHTAVLAISQQSAKPATPCDLVNVCLERKKLPCPPCNVPVEVTCLGQHETIYVPCHGAVPRSCGRPCGRRLDCTNHVCQLPCHVPFDETGEKLCEECERSCELSRPCDHECKRWCHPSPCADCKITMKMQCHCALTNVFVKCFEWQSADQEKRNELLSCGNNCPKLAPCKIKNRRGTCGSSDIVK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-