Mlon014432.1
Basic Information
- Insect
- Microvelia longipes
- Gene Symbol
- lola
- Assembly
- GCA_018340805.1
- Location
- JACMZG010001859.1:6589861-6630599[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.075 9.2 8.0 3.8 5 21 37 53 34 54 0.93 2 19 0.019 2.3 9.9 3.1 2 19 63 80 62 85 0.89 3 19 0.0013 0.16 13.6 1.1 1 20 92 111 92 112 0.96 4 19 0.57 69 5.3 1.6 5 21 138 154 135 155 0.94 5 19 0.00064 0.079 14.5 1.4 2 23 164 186 163 186 0.92 6 19 5.5 6.7e+02 2.2 2.0 1 14 193 206 193 208 0.90 7 19 0.072 8.7 8.1 0.4 5 20 243 258 240 260 0.92 8 19 0.0081 0.99 11.1 4.0 2 19 269 286 268 291 0.89 9 19 1.1 1.4e+02 4.3 1.3 1 11 298 308 298 311 0.86 10 19 0.85 1e+02 4.7 0.5 5 20 341 356 339 358 0.91 11 19 0.00033 0.04 15.5 0.1 3 23 368 389 366 389 0.95 12 19 0.044 5.4 8.8 1.0 5 20 426 441 424 443 0.92 13 19 0.008 0.97 11.1 3.5 1 23 451 474 451 474 0.91 14 19 3.6 4.4e+02 2.8 0.4 5 21 490 506 487 507 0.90 15 19 0.007 0.86 11.3 0.7 5 21 621 637 618 638 0.93 16 19 0.16 20 7.0 1.3 5 21 688 704 685 705 0.92 17 19 0.25 31 6.4 2.6 3 19 715 731 713 731 0.94 18 19 0.013 1.6 10.5 1.6 5 22 758 775 756 775 0.94 19 19 0.012 1.5 10.5 3.1 3 19 785 801 783 806 0.93
Sequence Information
- Coding Sequence
- ATGTGCAACATCTTAACTGATATGTGTTTGGTTAAATTCATCGCTGAAGAGTTTGTAACCAGCAGTGACAAATTCTACAGTCAGCACACTGATAAAATTCATCACTGCAAATGTGGCAAAAGCTATAAACACCGTCAGGGATTAAATCTCCACCAGCGACTGGAATGTGGGAAAGAAGCGTCAATTTCCTGCCCTTACTGTCCTTACAAATGTAAACAACCCGGAAGTCTGAAAATCCACTGTAATTTGAAACACAACCCGAACGCGGAAGTGTTCACGTGTAATCAATGCGATTACACCACTAAGATTAAGAGTAATTTAAAAACTCATtaCGTCTGTCTTAACATAGGTTTCACTGATTATTATGATGACGTCATGGAACGAGGCATTTTAACTGGACTTCATCGATGCGGATGTGGAAGAAAGTATAAATACCGCAAAGGACTGCTCTACCATCAAAGATTCGAATGTGGCAAAGAAGCGACCATCAAATGTCCCTTATGCCCCTACAAATGCAAGCAACCTAATAATCTAAGGGCTCACTTCAACGCCAAACATAACCCTAACGCTAATCTTTATAAATGCGAACTCTGTCCGTGCACAGTTAAAACGCCATACAGTAAGATTGATCTGACTGGTTCTGATGGAGAATTAGCTGAAGCATCATACAACCAAGATCAAGGTTCCGATACCCAAAGCATCACATCATCCGAAGTTTATCAGTGCGAATGTGGCAAAACTTACAAATACAGAGCTAGTTTGTACAACCATAAGACCTTGGAATGTGGCAAAGAAGCCGTCATATCCTGTCCTTACTGCCCTTATAAGTGCAAACAACcaggaaatttaaaaactcattGTAACCTTAAACATAACCCTAACGCAAAAATTTTTACCTGCAATCACTGCGATTATACGACCAAAGTCAAAGgcGTTAAAATTGATCTAACCGATGACGAACCATTGCTCAACGAAGACGACATAACCAGCATCACATCATCTGTGGACGTGTTCAGTTGTGGCTGCggcaaaatttataaatcccgCAGAGCTTTAGGCACACATAGACATTACGAATGCGGAAAAGTACCGTCTTTGTTTTGCCCTTACTGCTCTTACGTAACCAAGTTACCTGGTAACTTAAAAAGACATATTATTGTAAGACATAATGTTGTAGAAAATGGCAATAAAgctctttGCGTTAGCATCGATATATCCGATGACCTGCTCAATGAGGAAATCCGAAGTCTGTTAGCTCCGGAAGTGTTCAGCTGTGAATGTGGCAAGACGTACAAACACCGGGCTAGTCTTTACAACCACAAGTCATACGAGTGTGGCAAAGAAGCTTCCTATGAGTGTAAACTTTGCCCCTACAAAAGTAAACATCCGGCCACTTTGAAAAGGCATCACGTATTAAAACATGAAGACATCCAAAGCATCACTTCATCAGGTGAAATGTACAAATGCGAATGTGGCAAAATCTACAAACTAGGCTCTAGTTTGTACAACCATAAGAAATTCGAGTGCGGGAAAGATCCCACCTTACCGTGCCTTCATTGTACTCAAAAgCAAATGATGTATGTCTCCCACGTATCGGCTCGACCAATTTTTAAGGCAAATTACATCAGTCGGTATTGTGACTTTAGGGCTGAACAAACTTGTGTCCACATGTTCCATTTACCAAGTTTAAAGTTGAAGAAGTATGCTCTCTACATCCATCCATTGCCAACTTTAAGTCAGAAGAATCGTCTCTCCACGTgttCAAATACGAATTTAACTCGAGATTCATTTCACTGTGATAAATCTATTAGCATCCTGATACCTGGTGATTCCACCCAAAACAGCGATGTACATTGGTGTGACTGTGGAAAATCCTACAGGTCAAGAAGTGGATTGCTCACGCATAAGCGGCTCGAATGTGGAAAAATAGCTTCGCTCGCTTGTCCTTTCTGTTCTTATGTAACTAAACACCCAAGTTTCAGAATCGATTTTGATGAAGCTAATTTCGATTTACTCTGTAAAGAAGACTTTCAGAACAACACTGGGGAAATGCATCGATGTGATTGCGGAAAGCTGTACAAGTATAAGAGTGGTTTAAACCAGCATAAGAAGCTGGAATGCGGCAAGGAACCAACGCTTGCATGCCCATGCTGTTCTTTCATGTTTAAACATGCTAGTAGCTTAAAAAGacattGTTTTCATGTTGATTGCACTGAGTCATCGCTCCATAAAGAAGACACCCTTCAAACATCCGGAGGGATGTTCAGTTGTCATTGTGGCAAGACGTACAAATACGTATCGAGTTTGAAGACTCACAAGCGAATGGAATGTGGCAAGGAGGCATCCATCGCATGTTCATACTGCCCTTATAAAACCAAACACCCAAGCAGCTTAAAACGACATTGCATTTTGAAACATGCTAACATAATCAATTGA
- Protein Sequence
- MCNILTDMCLVKFIAEEFVTSSDKFYSQHTDKIHHCKCGKSYKHRQGLNLHQRLECGKEASISCPYCPYKCKQPGSLKIHCNLKHNPNAEVFTCNQCDYTTKIKSNLKTHYVCLNIGFTDYYDDVMERGILTGLHRCGCGRKYKYRKGLLYHQRFECGKEATIKCPLCPYKCKQPNNLRAHFNAKHNPNANLYKCELCPCTVKTPYSKIDLTGSDGELAEASYNQDQGSDTQSITSSEVYQCECGKTYKYRASLYNHKTLECGKEAVISCPYCPYKCKQPGNLKTHCNLKHNPNAKIFTCNHCDYTTKVKGVKIDLTDDEPLLNEDDITSITSSVDVFSCGCGKIYKSRRALGTHRHYECGKVPSLFCPYCSYVTKLPGNLKRHIIVRHNVVENGNKALCVSIDISDDLLNEEIRSLLAPEVFSCECGKTYKHRASLYNHKSYECGKEASYECKLCPYKSKHPATLKRHHVLKHEDIQSITSSGEMYKCECGKIYKLGSSLYNHKKFECGKDPTLPCLHCTQKQMMYVSHVSARPIFKANYISRYCDFRAEQTCVHMFHLPSLKLKKYALYIHPLPTLSQKNRLSTCSNTNLTRDSFHCDKSISILIPGDSTQNSDVHWCDCGKSYRSRSGLLTHKRLECGKIASLACPFCSYVTKHPSFRIDFDEANFDLLCKEDFQNNTGEMHRCDCGKLYKYKSGLNQHKKLECGKEPTLACPCCSFMFKHASSLKRHCFHVDCTESSLHKEDTLQTSGGMFSCHCGKTYKYVSSLKTHKRMECGKEASIACSYCPYKTKHPSSLKRHCILKHANIIN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -