Mlon027500.2
Basic Information
- Insect
- Microvelia longipes
- Gene Symbol
- -
- Assembly
- GCA_018340805.1
- Location
- JACMZG010001908.1:60090607-60092532[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.2 7.6e+02 2.0 0.6 3 23 210 231 209 231 0.94 2 14 2.3 2.8e+02 3.4 1.5 1 23 252 275 252 275 0.90 3 14 0.15 18 7.1 0.2 2 23 278 299 277 299 0.92 4 14 0.00052 0.064 14.8 0.0 2 23 307 328 306 328 0.96 5 14 0.091 11 7.8 0.7 2 23 336 358 335 358 0.95 6 14 0.0046 0.56 11.9 0.1 2 23 365 387 364 387 0.96 7 14 0.00015 0.019 16.5 2.0 1 23 393 416 393 416 0.96 8 14 0.91 1.1e+02 4.6 1.6 2 23 420 441 419 441 0.96 9 14 2.1e-06 0.00025 22.4 0.3 1 23 449 471 449 471 0.96 10 14 0.18 21 6.9 0.3 1 23 477 499 477 499 0.88 11 14 0.00052 0.063 14.8 1.6 1 23 505 527 505 527 0.97 12 14 0.00018 0.022 16.3 2.1 1 23 533 556 533 556 0.97 13 14 7.5e-05 0.0092 17.5 0.9 1 23 562 584 562 584 0.97 14 14 0.06 7.3 8.4 0.8 2 23 591 613 591 613 0.90
Sequence Information
- Coding Sequence
- ATGGAATCCCCCTGTAATGTGTTTATAAATGAAGCTTTGCCTGACGAAGAAGATGCGAAAATATGTTTCGTTTGTGGCGATAATTTATCCGAAAACGAAAGAATAATAGCAGAAACCGAGACGTCTTACTTACACGTACCTCTAGCTAATAAACTTGGGCAACTTATAGGTGGTAATTTCTGTATCGTTATCACTAAACATGACGAGATATGCGGAGattgtttacttattattaatcagGTTGATGAGATGGAGTTTAATATAAAGATATCTAAGGATAAATTAATAGGTTTATTGCagaataagtataaatttaatttagtcgaGGAGACGGTAGAGGAAGAGGAAGGAGAGATAGTTTACGAAGAGGAGGATGTAAAacctctaaattttaatgatgaTGAAAACTCTTTACAGACACCTGTTGAGCAACTAGAAGAGGAACCATTCTCACCTCCCTCGGAATTATTATTAGACTTTGTTAAAGAAGAAACTCTTAAATCAGCAGCAGAACCTCTTAACTCTACTGTTGAGTCTATTGAAGAATCCACAGTTTTATCTACAAACGATCAAATGGAAAATGACAAATtctattacttaaatgaaaGTGCCAGTAAAGATATTTTATGTGAATATTGTTGTACTCCTTTTTATTCAGTTGAAGAACTTGATGAACATGTTAAACAAACGCATGATACTGAAAGTATCAATGTTGTTTTCGATAGCGATAAGAAAGAAGTATCTAATGTTATTTATAAGTGTGGTGTTTGTGATTTTAGCCATCCTGATAGACAAGACGTACTAAAGCATGTGCATAatattcacaaagttgtctgtgagTTGTGTGGTCtgttttttgataatatttcttcattattatttcattattcatcTCACGATAAAAGTGGTGGGTTGGACGTCTGTAATATTTGTGAGATGCCTTTCCCAAGTAAAGCAGTGCTGGCAAGGCACATGGATGTACATAAGAGGAGTGGAGGACCTGTAGTgtgtaatatttgtaatatagtATGCACTGATAATTTACAAGCTATGTATCACAGGAGAAATCAGcatagtattattaaaaatttaacttgtgGATTATGTGATATTCCTGTTTCATCAAATTTAGAACTTAAACATCATATTTTAACTGTTCATAGGGGTAAAAAAGAATTCAAATGTACTAAATGTGATATGACTTTTAATAGATTATTGCAGTTTGAAAACCATCAGATGTACGCTCACGGAGATTCACAGTGTAGATTTTGTAGAAAACTTATTGAAGATAAAGTGAAATTAAGAAAACATGAACTAAGACATGCTCGCTCGGAAGCTAATAAATATAAGTGTGACGTCTgcgataaaacttttaaaacatctGGTGGTTTAAAGGTGCACGCAGTGAGTCATACGGGCAAGTATAAATTTTTCTGTGAATTTTGTGGCCGAGGTTTTATGTCTAAAGTGATCCTCGAAGAACACAAAGGAGTGCATACTAAAGAGGAGAGATACGTTTGTGATATCTGTGGTAGGAAGTTTGTTCTCAATAGTACATTTCATTTGCACAAACAATGGCATAAAAATCCTTTTCCTTTCCCGTGTAAGATGTGTGATAGAAAGTTCCGTTACAGATCTGAACGCTCCAACCATGTGAGACGAATCCACACTGGAGAAACACCTTATAAATGTCAACACTGCGATGctgcttttattaaattaggatATTTGAAAAAACATTTAGTAGTTCATACTAAGATACACCCTAATACTTGTCATATATGTAGCAAAGGATATGATCAGAAGAAGGCTTTAGCTTTTCATCTTGCTAAAGTACATAATGATACTTCTATGTTACAACAATTTCCTAAGGTGTGTGAGTATAAGGTTGCACTGAGACCTGAAGAATATCCTGATGTTGATTAG
- Protein Sequence
- MESPCNVFINEALPDEEDAKICFVCGDNLSENERIIAETETSYLHVPLANKLGQLIGGNFCIVITKHDEICGDCLLIINQVDEMEFNIKISKDKLIGLLQNKYKFNLVEETVEEEEGEIVYEEEDVKPLNFNDDENSLQTPVEQLEEEPFSPPSELLLDFVKEETLKSAAEPLNSTVESIEESTVLSTNDQMENDKFYYLNESASKDILCEYCCTPFYSVEELDEHVKQTHDTESINVVFDSDKKEVSNVIYKCGVCDFSHPDRQDVLKHVHNIHKVVCELCGLFFDNISSLLFHYSSHDKSGGLDVCNICEMPFPSKAVLARHMDVHKRSGGPVVCNICNIVCTDNLQAMYHRRNQHSIIKNLTCGLCDIPVSSNLELKHHILTVHRGKKEFKCTKCDMTFNRLLQFENHQMYAHGDSQCRFCRKLIEDKVKLRKHELRHARSEANKYKCDVCDKTFKTSGGLKVHAVSHTGKYKFFCEFCGRGFMSKVILEEHKGVHTKEERYVCDICGRKFVLNSTFHLHKQWHKNPFPFPCKMCDRKFRYRSERSNHVRRIHTGETPYKCQHCDAAFIKLGYLKKHLVVHTKIHPNTCHICSKGYDQKKALAFHLAKVHNDTSMLQQFPKVCEYKVALRPEEYPDVD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -