Mlon017208.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microvelia longipes
Gene Symbol
-
Assembly
GCA_018340805.1
Location
JACMZG010001863.1:35353768-35374490[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.019 2.3 9.9 0.3 2 21 358 377 357 378 0.93
2 9 0.02 2.5 9.8 3.8 1 23 430 453 430 453 0.94
3 9 0.038 4.7 9.0 8.9 1 21 458 478 458 480 0.95
4 9 4.1e-05 0.005 18.3 0.2 1 23 486 508 486 508 0.98
5 9 0.00059 0.072 14.7 0.8 1 23 514 536 514 536 0.98
6 9 4.3e-06 0.00053 21.4 3.4 1 23 542 564 542 564 0.98
7 9 0.00049 0.06 14.9 6.3 1 23 570 592 570 592 0.98
8 9 3e-06 0.00037 21.9 1.0 1 23 598 620 598 620 0.98
9 9 1.1e-06 0.00014 23.2 1.9 3 23 654 675 652 675 0.95

Sequence Information

Coding Sequence
ATGATTTTATGTCGTAAGATACAAACATCTAAACCTGATTTGACTGAAGATGAAATAAGCTCTTTTAACAATATAACTGCACCTAGAGAACCCGCTGAGACATCAGAATCTCTGGTTAAGCTGTTGGAGTCCATGACAAGTGATGTTTTAGTAAAGGACCCAGAAGTTGAAGATAAACTTTATACTCAGGTTTTTCAACATATGAAACAAGATGATATGTATTTTATTGCAAAGAATGACGAGTTGATATGTGCAGATTCTTTTCATTTGGCTTCATTCATGGAGTCGTCCATTGGGATACGTTGGAAATCATACAGCTTGCCCGAGGAGCTTACTGACTTGgctaaaatttcgaaattaCTTGGATATATGGAAAATGGACTCAGTGATAATCTAGACAAATATCGAGGGAGTTTTATTGATGAATTGGTGTTTGATTTAGAAGAGAATTTGATGGATGAGGATGAAGATTATCTTCCTATTTTAGAAGAAATAGAACAAGAGCAACAGGAACCCATTCCTCAAGGCTCTTCCTCCGACTCTGATAGTTCTGattatgaAACCTGGGATCCGTCAAAAGAGGAATGGGAAAAACCTAAACGGCAAAGGAAACTAATTCCTTGGACTGACCGACAAAAAGAAATTACCCTGGATTACTTTCAAGACAATATTGCTCGAAGGAAACCTCCTATTCAATCTGAGTttaaagagACTGAACCAGCTGCCAAAAGAAAAAGAGGTCGACCTAAGAAAGTAGACAGTCCTGTGCCCGTAACTCCCTTTTTAGAGCGATCAGTTAGAATCCGCAAGCAACCTTCAAGGTTCTCTGAAATGTTTCAAGGCAAGGaattagaaaatgttttaattaaagaaaatattacccATGAGACAGAGGTAGTTGATGATGGACTTTACGAGAATGAAGTGGAAGATGAACAAGCTACTGATCAATCTCAACCTGTTATTGGTGTTATAGGATGGATGCAAACTAAGTGTGGAAAAACTCTTGGTAATGTAATATGTAAAAAGAGAGGAGGAGTATTAAAAGGTACCAGTGGCATAACAAGGTTACAGTGTACAGTCTGCAAGAAAGAGTATTTTCAGAAAGGTGTTCTCTTGAGGCATTTGCTTAAAGATGACTGTGGACCTCCTGGTATTACATTTGATGACATCATTTGTCCTACTTTTAATATTACCACTACGgttCAAGAAATGCATTTACTTAATGCAGATGTTGAAGTAAATGACTTAGAAGATTTATCTGTTGGTGGTAAATCAAGGAAAAAATATGTCTGTTTATTGTGTCATAAAAGTTTTCCTAAGAAGTGCAGCCTCGTTTACCACGAAGAAAAAGAACATACTCACCACATATTTACCTGCAGTACTTGTGATAAACATTTCAAACATAGATTGTTATTATTAAGGCATCAAAAATGTCATGAAGAATCAAGGCCGTATGTCTGTGATGTTTGCTCTCTTAGTTTTAAATATCCGTCTAATTTAGCACTACACAAACTGTCTCATTCGAGTTCTGGGAGGTTTACTTGTTCCTTTTGTTCTGCTTTATTCAACACAAAGACATCCTTGGAACTTCACATTAGGGTTCATCTTGGTTATAAACCATTTCAATGTAGTGTTTGTCATAAAggttttagtcaaaagaataatttaCAAGAACACTTCAGAATACACTCAGGGGAGAAGCCATTTAAATGTAGTTGCTGTTTCAAAGAGTTTAAAACCTCATCGCAATTAAGAACTCACATGCTCACCCACAACGAAATGAAACCTTATAACTGTGGTGAATGTCCTAAAAGTTTTAGACACAAGGATGCCTACGCTGCACACATTAAGAGGCACACGGGGGAGAAAAGGTTCCCTTGCATTCATTGTGGTAAACTTGAGGGTGCGAGTGTTAAAAAGCATGAAAGACTACATGTAGGGGAAAAACGATTGGCATGTAAACATTGTGATAAACCGTTTACTGACAGCTCGAATCTGGCTAAACATAAGAAAAAAGCTCACGGAGGGGGTCTGGATAATTTAGCCAGAGTTATTTATCTTAATCTTGATTTACCAGACCAGgATCTGAATCATCTTGACATCGGGAATATCAATGAAGAatctaatacaaataatttatcagTTTTGAATTTAGCCTTAGGACATTGTGAAACAGAACTTGAAGATAGTTCATTACAGTCTAAAAACCTTcctcttgtttttaaaactCTGGATCAGCAAAATATCAAAGACAAAGATTTAAATATTGCTCTATCCGATATTCAAAGTCAGTTAGGAGATAACAGTCAGCTGAGTGTtcctattgttttaaaatctcTTGGAAGCAATGTGGAGGGGAAACACAATAATCAACTTCCAATATTTAGTGCAGAAAACATGCCACTGGTACTGAAGAGTTTAGAGGAAAGCACTTGCAGAGGGAAAGATATGCCTCTTGTGTTGGACAGTGTTGTGGATAGTGAGAATAGTTCTAATCAATCACTTAGTTTATCACATAACCAAGATAGAATTTCATTAGCTTTATCCAGTCATCAATCGCAGATACAGgatttaaaagatttaagtgGGCTAGTAGAATCATCGCGACAAATTGTGACCGATAGTCAGGGAATACCTATTAAAATTACTCTATCTGATGGCACTCAGTTACAGaCAATGGAAGGAGCTTTAAATGATTTAAGTCACTTGAGTCAGGATTATGAAGTTCAGTTTGTTGAAGGACACAGCATTAAACTATTGTCATCATCTAGTGAACAAATGAAGTTACTTTCATCTGCTAGCGATGGTGAGCAGGATGACCAAAGCATAAAACTTCTTACAACTGCTCAAGAGCATGGTATCCATCTATTGGAGGAACACCAGGCTTTAAAACTACTTCCATCGAGTAGCGAAGAGATTTCTTCAAGCAGCCATAATGACCCTGATATGACATTGTTTGATGATTTCTATAATCAGGTTTACTTTAAACTTCATTTTAAAGGTGCTATTAAGTAtggatattttgaaaatgaataa
Protein Sequence
MILCRKIQTSKPDLTEDEISSFNNITAPREPAETSESLVKLLESMTSDVLVKDPEVEDKLYTQVFQHMKQDDMYFIAKNDELICADSFHLASFMESSIGIRWKSYSLPEELTDLAKISKLLGYMENGLSDNLDKYRGSFIDELVFDLEENLMDEDEDYLPILEEIEQEQQEPIPQGSSSDSDSSDYETWDPSKEEWEKPKRQRKLIPWTDRQKEITLDYFQDNIARRKPPIQSEFKETEPAAKRKRGRPKKVDSPVPVTPFLERSVRIRKQPSRFSEMFQGKELENVLIKENITHETEVVDDGLYENEVEDEQATDQSQPVIGVIGWMQTKCGKTLGNVICKKRGGVLKGTSGITRLQCTVCKKEYFQKGVLLRHLLKDDCGPPGITFDDIICPTFNITTTVQEMHLLNADVEVNDLEDLSVGGKSRKKYVCLLCHKSFPKKCSLVYHEEKEHTHHIFTCSTCDKHFKHRLLLLRHQKCHEESRPYVCDVCSLSFKYPSNLALHKLSHSSSGRFTCSFCSALFNTKTSLELHIRVHLGYKPFQCSVCHKGFSQKNNLQEHFRIHSGEKPFKCSCCFKEFKTSSQLRTHMLTHNEMKPYNCGECPKSFRHKDAYAAHIKRHTGEKRFPCIHCGKLEGASVKKHERLHVGEKRLACKHCDKPFTDSSNLAKHKKKAHGGGLDNLARVIYLNLDLPDQDLNHLDIGNINEESNTNNLSVLNLALGHCETELEDSSLQSKNLPLVFKTLDQQNIKDKDLNIALSDIQSQLGDNSQLSVPIVLKSLGSNVEGKHNNQLPIFSAENMPLVLKSLEESTCRGKDMPLVLDSVVDSENSSNQSLSLSHNQDRISLALSSHQSQIQDLKDLSGLVESSRQIVTDSQGIPIKITLSDGTQLQTMEGALNDLSHLSQDYEVQFVEGHSIKLLSSSSEQMKLLSSASDGEQDDQSIKLLTTAQEHGIHLLEEHQALKLLPSSSEEISSSSHNDPDMTLFDDFYNQVYFKLHFKGAIKYGYFENE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-