Mlon006765.1
Basic Information
- Insect
- Microvelia longipes
- Gene Symbol
- -
- Assembly
- GCA_018340805.1
- Location
- JACMZG010000008.1:62478786-62480390[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.5 61 5.4 0.3 1 23 71 93 71 93 0.93 2 15 0.0019 0.23 13.1 1.6 1 23 99 122 99 122 0.94 3 15 0.009 1.1 10.9 0.3 1 23 128 151 128 151 0.96 4 15 0.09 11 7.8 0.8 1 23 157 182 157 182 0.95 5 15 0.00059 0.072 14.7 0.3 1 23 189 212 189 212 0.95 6 15 0.00019 0.023 16.2 0.5 1 23 218 241 218 241 0.97 7 15 9.4e-05 0.011 17.2 2.8 1 23 247 270 247 270 0.96 8 15 0.00026 0.032 15.8 7.8 1 23 276 299 276 299 0.97 9 15 0.0012 0.14 13.7 2.2 1 23 306 329 306 329 0.97 10 15 0.00022 0.027 16.0 2.8 1 23 335 358 335 358 0.96 11 15 0.006 0.74 11.5 3.4 1 23 364 387 364 387 0.96 12 15 0.061 7.4 8.3 0.6 1 23 393 416 393 416 0.95 13 15 0.038 4.6 9.0 0.6 1 23 422 445 422 445 0.97 14 15 2.9e-05 0.0036 18.8 1.0 1 23 451 474 451 474 0.97 15 15 0.0023 0.27 12.8 1.1 1 23 484 507 484 507 0.89
Sequence Information
- Coding Sequence
- ATGACCAAGATTAAAAGTGAATCTTTTGATGTTGCTGAATACAACTTTTCAAATGAAGATATTGCTCGAATGATTAATTGTACTGTCCGTTTAAAAAAGATCAACGTGTTTTCTAGCACTGATATTGTTCAGTCTGATTGCTCCAATAATCAAAGGTCAAACAATAGATCCACTccctttaaattagtttatttttgtggtaAAAAGCAATATAAATGCGTAGAATGCAGCTACAAAGCCAGTGCACTAAGTAAACTTAAATTACATTCAGTTGTTCATCTGACTGAAAAACCTTATCAATGTGCTCACTGCAGTTACTCTGCTAAGCAGTTGCGCCATCTCAAAGTTCATATTGAAGGAGTGCACAATAAAGATATGAAATACTCTTGCCCATATTGTGATTATCGAGCAGCCTTCAGCGGCTCTGTCAAGACTCATGTTATGTCTCGGCACACTGACGAGAGACCCTTTTCCTGCACGTTTCCTAATTGTTCTTATTCTTCTAAACTGCCATTTACTTTGAAAagtcatattaaattaattcatactGAGGTGGAAAAAACATTTGCATGTTCGGAATGTTCATATGCTGGAAGGTCTAACTATTCTCTTAGAAAACACATGGGAAGAGTTCATAGTGATGAAAAACCATTCCCGTGTCCCCATTGTGGCTTTAGAACTAATGAAGCTGCTTCTCTTAAGACTCACATAACAACCATGCATAAAGGGGAGAGACCGTTTCCTTGCCCTCATTGTCAGTACAGAGCTACCCAGAGTAGTCATCTTAAAACTCATATTACTTCTGTGCATAAAAAGGAAAAACCATACAAGTGCAAACAGTGCAAGTACTGCACCACTCAGAGCAGTCACTTGAAAAGTCATATTAATTTAAGACACAAAATGATAGAAAAACAGTACAAATGTCCTCAATGTCCTTATGAAGCTTCGTTCAAACACCACATGACCAATCACATCAGAGCTgttcataaaaaagaaaaaccattTCCTTGCCCACATTGCGAACACCGTTCTACTCAGAATAGTTCTCTCATTCAGCACATAAAACTGAAACATAACGGAGTTAAACCTTTTAAGTGTCCTCACTGCCACTATTCTACTGGTCTTAGTAAAACGTTAACTGAGCATATCGATAGAATGCACTCGGGAGCCAAACCATTTCAGTGCCAGCATTGTGACTTCAGTTCCATTGAAGAGTATGCTGTTAATATACACCTCAGTAGAGTCCATCAAGAGAAGCGTTCCTTTTCCTGCTCTCTGTGCAATTATAGTGCTagtcaagttttatttttaaaatctcacATCAATAAAGTTCACTGGGATGAGAAATTATATGATTGTCCTCATTGTGAGCTGAAGTACTCCCAGAAAGCATCTTTGTTGGCTCATATTAATAAGAAACACAGTGAGCTCAGGGATAACAAGAAAGCCTTCCTTTGCCCTCATTGtaagtataaaacaaatgtCAGATCTTCATTAAAAGCTCACATTGGCTTGTTACATTCTGATAGCAAAACTGAAGCTGTAccaaagataaaaattttaatatctgaGAAATCATTTCATATCAAAGAGGAAATTGAGTAG
- Protein Sequence
- MTKIKSESFDVAEYNFSNEDIARMINCTVRLKKINVFSSTDIVQSDCSNNQRSNNRSTPFKLVYFCGKKQYKCVECSYKASALSKLKLHSVVHLTEKPYQCAHCSYSAKQLRHLKVHIEGVHNKDMKYSCPYCDYRAAFSGSVKTHVMSRHTDERPFSCTFPNCSYSSKLPFTLKSHIKLIHTEVEKTFACSECSYAGRSNYSLRKHMGRVHSDEKPFPCPHCGFRTNEAASLKTHITTMHKGERPFPCPHCQYRATQSSHLKTHITSVHKKEKPYKCKQCKYCTTQSSHLKSHINLRHKMIEKQYKCPQCPYEASFKHHMTNHIRAVHKKEKPFPCPHCEHRSTQNSSLIQHIKLKHNGVKPFKCPHCHYSTGLSKTLTEHIDRMHSGAKPFQCQHCDFSSIEEYAVNIHLSRVHQEKRSFSCSLCNYSASQVLFLKSHINKVHWDEKLYDCPHCELKYSQKASLLAHINKKHSELRDNKKAFLCPHCKYKTNVRSSLKAHIGLLHSDSKTEAVPKIKILISEKSFHIKEEIE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -