Mlon025937.1
Basic Information
- Insect
- Microvelia longipes
- Gene Symbol
- -
- Assembly
- GCA_018340805.1
- Location
- JACMZG010001908.1:31288128-31307211[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.028 3.4 9.4 2.5 1 23 168 190 168 190 0.95 2 24 0.00027 0.033 15.7 3.2 1 23 204 226 204 226 0.98 3 24 0.0026 0.32 12.6 1.9 1 23 237 261 237 261 0.96 4 24 0.0066 0.81 11.4 5.8 2 23 268 290 267 290 0.96 5 24 0.0072 0.88 11.3 0.9 1 23 415 438 415 438 0.95 6 24 0.032 4 9.2 0.0 3 21 446 464 445 465 0.92 7 24 1.9 2.3e+02 3.6 0.9 1 23 476 498 476 498 0.97 8 24 0.039 4.7 8.9 0.3 1 23 539 562 539 562 0.93 9 24 1 1.2e+02 4.5 0.1 1 23 573 596 573 596 0.93 10 24 9.9 1.2e+03 1.4 0.1 2 12 603 615 602 617 0.86 11 24 0.13 15 7.3 0.1 2 23 636 658 635 658 0.94 12 24 0.0036 0.43 12.2 1.0 2 23 665 687 664 687 0.95 13 24 0.0079 0.97 11.1 4.1 1 23 695 717 695 717 0.96 14 24 2.7 3.3e+02 3.1 0.1 1 23 751 779 751 779 0.92 15 24 0.0019 0.24 13.0 0.2 2 23 783 805 782 805 0.95 16 24 0.083 10 7.9 0.3 2 23 812 833 811 833 0.97 17 24 1.3 1.5e+02 4.2 3.7 1 20 856 875 856 877 0.88 18 24 9.7e-05 0.012 17.1 1.4 2 23 899 921 898 921 0.96 19 24 0.00037 0.045 15.3 0.5 2 23 955 978 954 978 0.96 20 24 1.9 2.3e+02 3.6 0.6 1 23 985 1008 985 1008 0.96 21 24 0.00031 0.038 15.5 4.2 2 23 1046 1067 1046 1067 0.97 22 24 0.0072 0.87 11.3 0.4 1 23 1072 1094 1072 1094 0.95 23 24 0.0023 0.28 12.8 0.1 1 23 1182 1205 1182 1205 0.90 24 24 7.3 9e+02 1.8 0.3 2 14 1209 1221 1208 1229 0.76
Sequence Information
- Coding Sequence
- ATGACAGAAGTGATATCAGTAGATAAGTTTGACAGCCTTTGCAGGCTTTGTGCTACTTATGACATGATTAACATGGATATTTACGGAGACAAAGGCAGACAAAGAAATCTCCCTGAGAAGATCTCTACTTGCTTACCATTCcagatatcTGAAGATGATTGTTTGCCAAAATTTCTGTGTTATAAATGCATATTCCACTTAGAAACATTTTATGAATTCAGAAAGGATTGTATTAAAGCTATATCTCTAACAGAGTTGCcatctttaaaaatagaaacttGCAACTTAGTTGCAAATGAAAatTTTGTTGACTGGTCATCGAACCAGGGAAAAGAAAACACTGCTGAATATCACAATGCTGAACCACTAAATCCATCTGATTTTCTTGAAGCTTTTTTgGACGACTCGCCCTCACCTAATGACTTGACTGATGTTGAAGCCAAAACAACCAACAATGTGAATGATATTAAAAGTAATCCTGGAGAAAAATcatcacaaattttcaaatgcaaAAGTTGTTCCAGAGCTTTTGCTAGTCATGCCTCTCTTGTTCTACATTCCAAATTTCATGTAGAGAGTAAAAAGCAGAGTGACACAGTGAGAGAAATGTTTCCATGTTATACGTGTGATAAAGTATTTGGCTCCAGACATCATTTAGCTCAGCATTCACGTGTTCACATGTCAGAGACTCAAAGACAACAAAAAATATATCGCTGTGAATTATGTAAAACAAAGACATTTTCAAATGCAAAACATTTGTGGAATCATGTTTCCTCAGTGCATCGGGGTCATCCTCTCTTAACATGCCAAATATGTCATCGAATGTTTTCTTCAATTTGTAATTTACAtgatcatattaaaattaagcacAAAAGTAGCAGTATCCACCATCCTGTTAGAGCCATACATAAACAAACATCTTTTAAgcagGAAATAAAAGTTGAATCGCCAATGGCAATTGAAGAATCTGAAGGAGATGATGatggaaataaaaatgatgATAAAAAGAATGATGAGAATTGTTCTAGCAggcgaaaaatgttaaaacctAGAAAAATTGAGCGAGAATCTGATGACAATAAAACAGAAGAGTCCAATAACCAAGTGATTGATTTAGATCAGGAAGCGATCATTAAACAGGAACAGGATAGTTCACATCATGATCTGGAGGtgGTTGTTGATGATATGATGGAATGTGATGTTGAGTTTGCTGCTGAAAGTTTAGTTGAAAGTGAAACAGTATTCTGTTGTGAGATTTGCATCAGAGAGTTCAGCGACCGTGGCTCTTTATGGTTGCATATGTTGTACACACACCGTGAGGAAGCTTCTAAAGCATGTGGCTTATGCTTGAAAATATTTACTGATAATGATGCACTCATACAACATGTTGAAACATGCAATCCACGTGGTGCTGAAAGGAGAAGataTAGTTGTACCGTATGTGCTAGGCAGCACGATTCAAGAAAGAAATTAGTTGCCCATGCCAGAATACATAGACTCATTGATGAACAAGGAAATGCTGTTGATCCCGAGTCAGTTGTTGTACTGAATTCAAACTCTCTTGCCAACCCCGCTGCTGGTTATAACCATTCTGTCATTGACGAGGGAGCTGCTTTTCAATGCACTGTTTGTTACAAACCATTTGAAACTGAAATCAGAATGATCAAACACAAAGCATCTGCTCACAGGGAAAAGCCAGCAGGAAATGCGTACTACTTTGCATGTGATATATGTGGTTTAGCAAGTTTAAACAGAACAGATAAATGGAGACATATATCCACTGAACATGCTGGTGAGCCTTCTCTTACATGTCCTCAGCCTCAATGCaacaagataTTTGCATCTGAGCAAATAAAGAAAGAGCATTGTGACAGTCATCATGATATACAAGGAGTTTATCCGAGTACATGCGAAGTTTGTGGAAAATTGTGGAATACTAGAGTTGAATATTGGAAACATATGATGGGCGTTCATCCGGATTGTTTACCACTTGTTTGTGGTGTTTGTTTGAAGGTTTATTGTAATCTAAGTGATCTGGTGCATCATGTACGGGAAACTCATTATCCTCTTACTGGTGGAGAGCATTGCTGTGACATCTGTGGTAGACCTTATTCAAAAGTATCCAAAATGTCTCGCCATAGAAAAATCCATTCAACTGTGCCAATACCTGAGGATGTAAGGATAATCATAGAAAATCCTGTCTCTCAGAATAATGAAGGATTACACTTTATGGAGATAACTGGACCACCATATGCTTGTGAACAGTGTCCAAGTGGTGAAAATGTGTACAGTTGTTCAACTTTAGAAGAATTGGGAGCTCATAGAAGAGAAGTTCATAACTCTGTGCCGTGTGATCTTTGTACCAAGTTCTATGCTTCAACATCACAGCTATGGAAACATGTTAGTCGTGCTCACAAAAATCACCCAGACGTGACATGTTCTATTTGTAAACGCACTTCTGCAAACCGTGTCATTTTATCTGCTCATATGTCAAAGCACCGATCTCAACAGTTAACTAGGGAAAATTCTGAAGAACCAGATCCACCTGACTTAGACGATACTGAGCATACATGCATTAAATGCAATAAGGTTTTTAGAAAAGGTTCTTTAATGCGGAAACATTTCAAGCACTGTAAAGGTCCACGGGCTGCTCCTGCTGTAGCCTCATTACCACCTCCAGTCAATGGAATAAGTACATGTGCCAAGTGTGGCAAACAGTTCATGTCTCAGAATACATTATATAAACATATGAAGAGTGTTCATGTTATATATACGTGTGAATTATGTCCAGAATCAAAACATGATAGCAAGACTTTATTGTATCAACATGTGCTGGAACTTCATCGGGATCATCCTAGTCTTAAgtGTGATATAAGTGGCTGTGATAAGATATTAAGAACTAATTCAGATATGTTGAGACACAGGCGCACCCATAATCAAGTTCTTACTGTGTACATCTGTAAATTTTGTGCTGAATTGTTACCTAGTAAAATGAAAATGAGAAAGCATTTGAAAATTTCTCATTCTTctgaatcaaaatatttatgttttatttgtatgcAAGCTGCTCCTAGTTATCAAGATCTTGAGAATCATGTTGCTGAGTTTCACAGTGCTTTAGTTAAGAGGCCTAACACTTGCAAGTTCTGTGGGAGGACGTGCTCTAGTAAATCTAAACTAATAGACCATATTAAGAATCATAGCTCTGCATTTCATCCTTGTAGGATGtgtcttaaaatatttgattctcCAGAAACACTCAAGGTCCATGTTGAAAATCATCCTACTGGAGCAGAACCTGTTTTAGAAGATGCAGAAGTTGATGAAGACGATGATGAAATTGAAGAAgTTGAACTTGATGAAGGAAGTATTATGGATATCATAGGAGCCAAAGGCACTCGCAGCATTGAATCATTGCAAAGTGTTGATGATAGCATCGATAGTCCCGGTGTGAAAACTGTAGATACTTCCACCACGGACGAATCAAAAAGAAAACAGGATTCAGAACTTGATGGATCTAATCATAAGAAGATGAAACTTGATTTCTCTTGTATAGTTTGTGATGAAACTTTTGAAACaagATCTAGCTTACTAGCTCACCAAGAGGAAGAGCACGATGATCTGACGTGTAAGAAATGTGGGACTGTTAGTGGCTCTAGTGAAGATCATGAAATACATTCTAAAAAATGCGAGGAGGAGGAAGGAAGAGAAGCTAGTCAACTTCTTGAAAATTTAATGACACAGGCAAGTATTGTTTCTATAAAGAGTATGTACTTTACCTAG
- Protein Sequence
- MTEVISVDKFDSLCRLCATYDMINMDIYGDKGRQRNLPEKISTCLPFQISEDDCLPKFLCYKCIFHLETFYEFRKDCIKAISLTELPSLKIETCNLVANENFVDWSSNQGKENTAEYHNAEPLNPSDFLEAFLDDSPSPNDLTDVEAKTTNNVNDIKSNPGEKSSQIFKCKSCSRAFASHASLVLHSKFHVESKKQSDTVREMFPCYTCDKVFGSRHHLAQHSRVHMSETQRQQKIYRCELCKTKTFSNAKHLWNHVSSVHRGHPLLTCQICHRMFSSICNLHDHIKIKHKSSSIHHPVRAIHKQTSFKQEIKVESPMAIEESEGDDDGNKNDDKKNDENCSSRRKMLKPRKIERESDDNKTEESNNQVIDLDQEAIIKQEQDSSHHDLEVVVDDMMECDVEFAAESLVESETVFCCEICIREFSDRGSLWLHMLYTHREEASKACGLCLKIFTDNDALIQHVETCNPRGAERRRYSCTVCARQHDSRKKLVAHARIHRLIDEQGNAVDPESVVVLNSNSLANPAAGYNHSVIDEGAAFQCTVCYKPFETEIRMIKHKASAHREKPAGNAYYFACDICGLASLNRTDKWRHISTEHAGEPSLTCPQPQCNKIFASEQIKKEHCDSHHDIQGVYPSTCEVCGKLWNTRVEYWKHMMGVHPDCLPLVCGVCLKVYCNLSDLVHHVRETHYPLTGGEHCCDICGRPYSKVSKMSRHRKIHSTVPIPEDVRIIIENPVSQNNEGLHFMEITGPPYACEQCPSGENVYSCSTLEELGAHRREVHNSVPCDLCTKFYASTSQLWKHVSRAHKNHPDVTCSICKRTSANRVILSAHMSKHRSQQLTRENSEEPDPPDLDDTEHTCIKCNKVFRKGSLMRKHFKHCKGPRAAPAVASLPPPVNGISTCAKCGKQFMSQNTLYKHMKSVHVIYTCELCPESKHDSKTLLYQHVLELHRDHPSLKCDISGCDKILRTNSDMLRHRRTHNQVLTVYICKFCAELLPSKMKMRKHLKISHSSESKYLCFICMQAAPSYQDLENHVAEFHSALVKRPNTCKFCGRTCSSKSKLIDHIKNHSSAFHPCRMCLKIFDSPETLKVHVENHPTGAEPVLEDAEVDEDDDEIEEVELDEGSIMDIIGAKGTRSIESLQSVDDSIDSPGVKTVDTSTTDESKRKQDSELDGSNHKKMKLDFSCIVCDETFETRSSLLAHQEEEHDDLTCKKCGTVSGSSEDHEIHSKKCEEEEGREASQLLENLMTQASIVSIKSMYFT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -