Mlon036386.1
Basic Information
- Insect
- Microvelia longipes
- Gene Symbol
- -
- Assembly
- GCA_018340805.1
- Location
- JACMZG010001914.1:45180618-45184410[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.7 85 5.0 0.0 1 23 266 289 266 289 0.95 2 14 0.00051 0.062 14.9 0.8 3 23 314 335 313 335 0.96 3 14 0.014 1.7 10.3 0.1 2 23 341 363 341 363 0.95 4 14 0.0011 0.13 13.9 1.4 2 23 366 387 365 387 0.97 5 14 1.5e-05 0.0018 19.7 1.6 1 23 393 415 393 415 0.96 6 14 1.6e-06 0.00019 22.8 1.9 2 23 422 444 421 444 0.95 7 14 0.00074 0.09 14.4 1.5 5 23 457 475 456 475 0.97 8 14 0.0031 0.38 12.4 1.8 2 23 481 503 480 503 0.96 9 14 0.027 3.3 9.4 0.7 2 23 520 540 519 540 0.97 10 14 0.0011 0.13 13.8 2.2 1 20 546 565 546 568 0.91 11 14 0.00025 0.031 15.8 0.5 1 23 576 598 576 598 0.99 12 14 3.1e-05 0.0038 18.7 2.8 1 23 604 626 604 626 0.97 13 14 4.1e-07 5e-05 24.6 1.5 1 23 632 654 632 654 0.98 14 14 0.0052 0.64 11.7 8.4 1 23 660 682 660 683 0.95
Sequence Information
- Coding Sequence
- atggatCTTAAAAGTATGGTAGCGTGCCCTGTGTGTACCCTCTACCTGAGGGAGGGTATGTCTATGCATAGCCATCTAGATACACATCCTAAGGACCAGGTCATAGATGCTTTCGTCCGTATGTATGCTACGGAAAGGAGTATATCTTATCAGCAGGCTCCGATCATATCTGCTGCAGCACCCATAGCTGGACCATTTGTACCTGTGGTTTCCGAAGTCCAGACTAGCTACCGGCAAGAACAAATACAAACAGCCAGTATAATACACCAGCCTTTAATACCTTATCCTATGTATAACCAGCAGCCTTACATACAAACTACAGGTCATTATGTGTCTGAACCACAAGGATATTCTGACAATGTTGACGTCATGCACACTCAACTTCCTATCGAAACTCATAAAACTGAATCGAGTAATCTTAAGAGTGAAGTTATGTTTGTAACACCTGAGATGGAGGAGGAAGAAGGCTCTACGTCAGTAAACAGTCCTAGATCTGCTGGTCACGACAGTGCTAAGTGTGAAGTATACGATGAGTACTTACTGTGTAACTACCAGGACGAGGCTGCGAGGCACGCCGATCACGAGTCCACTAAGAACCAAGgTGACTTAGAGCCGGAGCTCGAGCGTAGAATGGATCAGTCTCTGGAGACAGAAGAGAGAATGCCTCCCCAGGGAGAGATAACAGATCCTTCACCACATCCTGAGTGGGCACATTACCAAGAGCCGTTGCAGTCCAATGATAACGTGTGGGATCTGCGGAACGACCCGACAGACAGGAAGCAGGAGGAGAATAGATTCCCTTGCCTGTATTGTGAAGAAATTCTGGACAACCCTACTGAGAGGAGACTCCACATTGCCTCCATACACACCACCACCACTGTCGTCATGACTCAGTCCTTGCCTGATAAGGACAAACTtgatattaaacttaataaaatatgtgtCAAGTGTGATCAGACCTTTACCACTATCAAGTCACTTAGAGCTCACAACAAGACTGAACACCCTAAAATTATCAATACTTGTGAAGTTTGTAACTCTATGTTTATTGACAGGAAATCTTATATGGAGCATATCGCTAGTATTCATCCTTTAGAGTGTAAGCAAtgtggtaaaacatttttaaaacctatCGGACTGAAGCACCATGCTAAAACTCATCTTATCGTCAAGCCTCATCCTTGCCACCTTTGCCCAAAGACGTTTGTAACTCCGCAAAAGTTAAAAGAGCATATTAACGGACACACGGGAGAAGCTCCTATCCAGTGTGACCTCTGTGACAAATCCTTTAAACGCTAttctaatttaaaacaacataaagaCACGACTCatttcaagattaaaaaaaagaaaactgatattttcTGTCATTGTGGCGAGTCATTCCCGACCAAAAAGAAACTTATGTGGCATCAAGAAACACACGAAGCCAAGCCCAAACCCTGTCCTTATTGTTCTGAAAAATTCCTACACGTGACTAGCCTGACTCGTCACATCAGACGATCTCATAACCCTGAATATATCCCTCAAAATATGGTGGACAAAGTTAGGAACGTTCAGTGTCATATATGTGGCACTACTGTTTTACAAATGTCTTTAGCTAGTCATATGAAACAACACAATGAACAAAAGAAACATTCTTGTGTTATTTGTGGTAAAAGATTTTTCAAGAAGTGGAATTTAAATCTGCACAGATGGACTCACGCATCTAGGATATCAAAGCCTTATAAATGCAATTCGTGTAAAGCTGCGTTTATCCGTTTCGGAGATTTCCAAGCTCACGTGCGCTCTCACTTGGGACACAAGCCGTACACTTGTAACCACTGCGGCATGCAGTTCATTAGAAAACAGAATTGGCAGCGACACGAGAAGGAACACAGTGGTAATAAGTCGTTCCCTTGTAACCAATGCGGTAAGACATTTTTCCGCAGCTATTACCTCACTGAGCATCTCAGAGTCCATTCGGGAGAAAAGCCGTTTGCTTGTCATATCTGCAATAAAATGTCTTCAACCAAATCTAATCATAATAAACATCTTAAAACTCACCACGCTAGAGAAGTTTTAAATACTgaggtttaa
- Protein Sequence
- MDLKSMVACPVCTLYLREGMSMHSHLDTHPKDQVIDAFVRMYATERSISYQQAPIISAAAPIAGPFVPVVSEVQTSYRQEQIQTASIIHQPLIPYPMYNQQPYIQTTGHYVSEPQGYSDNVDVMHTQLPIETHKTESSNLKSEVMFVTPEMEEEEGSTSVNSPRSAGHDSAKCEVYDEYLLCNYQDEAARHADHESTKNQGDLEPELERRMDQSLETEERMPPQGEITDPSPHPEWAHYQEPLQSNDNVWDLRNDPTDRKQEENRFPCLYCEEILDNPTERRLHIASIHTTTTVVMTQSLPDKDKLDIKLNKICVKCDQTFTTIKSLRAHNKTEHPKIINTCEVCNSMFIDRKSYMEHIASIHPLECKQCGKTFLKPIGLKHHAKTHLIVKPHPCHLCPKTFVTPQKLKEHINGHTGEAPIQCDLCDKSFKRYSNLKQHKDTTHFKIKKKKTDIFCHCGESFPTKKKLMWHQETHEAKPKPCPYCSEKFLHVTSLTRHIRRSHNPEYIPQNMVDKVRNVQCHICGTTVLQMSLASHMKQHNEQKKHSCVICGKRFFKKWNLNLHRWTHASRISKPYKCNSCKAAFIRFGDFQAHVRSHLGHKPYTCNHCGMQFIRKQNWQRHEKEHSGNKSFPCNQCGKTFFRSYYLTEHLRVHSGEKPFACHICNKMSSTKSNHNKHLKTHHAREVLNTEV*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -