Mlon006869.1
Basic Information
- Insect
- Microvelia longipes
- Gene Symbol
- -
- Assembly
- GCA_018340805.1
- Location
- JACMZG010000008.1:64347002-64349089[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.7e-06 0.00094 20.6 0.5 1 23 115 137 115 137 0.98 2 14 0.00011 0.013 17.0 1.8 2 23 144 165 143 165 0.97 3 14 0.00017 0.02 16.4 0.2 1 23 280 302 280 302 0.97 4 14 0.0002 0.025 16.1 2.5 1 23 308 331 308 331 0.98 5 14 2.3e-06 0.00028 22.3 3.0 1 23 359 382 359 382 0.98 6 14 0.0039 0.47 12.1 0.0 1 23 394 416 394 416 0.93 7 14 0.00098 0.12 14.0 2.8 1 23 423 446 423 446 0.97 8 14 2.9e-05 0.0036 18.8 3.2 1 23 450 472 450 472 0.96 9 14 0.00077 0.095 14.3 3.9 1 23 479 502 479 502 0.94 10 14 0.0002 0.025 16.1 0.1 1 23 508 531 508 531 0.97 11 14 6e-07 7.4e-05 24.1 0.8 1 23 537 559 537 559 0.98 12 14 0.003 0.36 12.5 0.2 3 23 567 587 565 587 0.97 13 14 4.4e-05 0.0054 18.2 0.4 1 23 593 615 593 616 0.96 14 14 0.00037 0.045 15.3 0.0 1 23 624 646 624 646 0.97
Sequence Information
- Coding Sequence
- ATGTCCAATTCTATCGACGAAAGCTACGGCCTGAACTTCGAATGGATTGCCGCGGAGACAGGTATTGTCGAAGAGATAGGTGGTGTCGACAAAGATTGTATTGTTGTGCCTTCTATATCAGACGTAGAACAGTTTCAAGAACCTAATGAATACATTGAGATACAAGTAACGGAAGAGGAAGTTGTGTCTGACGATTGGCAAGTCGCAGAAGAAGAAGTAGTTTCTGATGACTGGCAGGTGACTAATGGAGCTGGGGGCGACATGGGTTTTGTTATAGAAGAGGCTTCAGAGGGAGACATTGGTAGCATTGAAGAAGCGGAGGAATATCTTAGACTTCTTCCATATCCTTGTAATCAGTGCAGTGAACGATTTAGCAAAAAATCTTTGTTGAATGCTCATCTAATCAGTCATCAGTTAGAAGACGCTTTGAGATGTCATTTGTGTGATGTTCAGTTTAAGCGTAAGTTAGAATTAATGGAACATATGAAAATCCATTCCTATATGAGCAGTGAGCACCTGGTCTTGGATCAACAGCTTCTTACTGTTCATTCTGCTAAGTCCAGCAAGATTAAGAAAAAAGTGggcaagaaaaaaattatcaagaaaAAGGCTAATTGGCAAAACCAACTTATGGCTCCTTTACCTGAGCATACTGACAACTCTTATGATTCAAAACCTATTCTGCTTATTAATTCTCTTTTTGATGTTAATTCTGGGTCCTCGTCTAGTAAACTTAAATATGATGATATCCTGATCAAAGCCGAACCAGACGATGATGATTATGAAATGGCTGAagatgatgaagaaaagtttccGATTATTGATCCTGCAAGACCCTATGTCTGCCAACATTGTGGTATTGGATTTGCCAGAGAAAAAGCTCTTATATCTCACAATATGATTCATGCGGGGGATTCAGCTTTTGAATGCCCACATTGCCATGAAATGTTTAGTAGTGAGCTTCTTTTAGACACCCACATGTCTACCAGACatcagagaattaaaaatttagctaaGAAAAAGAAGCTGAAGACCAatattaagaaaagtattgaatCAGACaagtttaaaacatttcaatgtGAGGAATGTGATGCCTCATTTACTCGGTATAATCAATTAAAACGCCACCATAGAAGCATCCATACCAAATCTGATGGAACAGTTAAGAAAGAAGTTTATGAGTGTGAACTTTGTAATTTAGTGTTTAGAAGTGATGAAGCTTTGATAGCTCACAGTGACTTGCACAATGCTTCTGATGAGATACACTCGTGTAATACTTGTGGTGAGGAATATACAGATGTTAATGAACTCCATAGTCATATGAAATCTAAACATAAATGGAGTCACTTCTGCCATGTTTGTGGAACTGCTTATAGAGATGCAAAATCTCTTACGAAGCATTTATTGACACATTCCGATTCGACTCTAATACACCCTTGTTCTCTATGCCATAGGCTTTTCTATAGTTCTAGTAAGTTGAAGAAACATATGGTATCCGCTCACTACAATAAGGAAGGCTATGACTGTGGGGATTGTGGAGAATCTTTTGTTGATGGAACCTCTCTGGCAACTCACAAACAAACCCGACACGGAATTGGTAGGTTATTTCCTTGTACTCAGTGTGGTAAGACTTTTACATCTCGATCATCTCAACAGATTCATATCAGAGTTCACACGGGTGAGAAACCATATGGCTGCAGATTTTGTTGGAAAGCTTTTGCTGATGGTGGTACTCTTCGAAAACATGAACGTATTCATACTGGGGAAAAACCATATGTTTGTCCTGTGTGTACTAAAGCTTTTAATCAACGGGTTGTGCTCAGAGAACACGTGAGAGCTCATCATTCAGAAGGTCGGGGTCGTTCATTTGAGTGTACAGTTTGTGGCGAAACTTTACCTCAATCAAGAGATCTGGTTGCGCATCTTGTAATGCACAGTGATGAAAATACAGCTAAACATCGCTTACCTAACACTTCAACACGCAAATACAGTCGGCGTAAAGATACATCTTCTACTTCTCGTAGTTCACGAAAATCACAACATTATATAGCTGACACTTCTCCTCCTTTGTCTCcttgtaagtaa
- Protein Sequence
- MSNSIDESYGLNFEWIAAETGIVEEIGGVDKDCIVVPSISDVEQFQEPNEYIEIQVTEEEVVSDDWQVAEEEVVSDDWQVTNGAGGDMGFVIEEASEGDIGSIEEAEEYLRLLPYPCNQCSERFSKKSLLNAHLISHQLEDALRCHLCDVQFKRKLELMEHMKIHSYMSSEHLVLDQQLLTVHSAKSSKIKKKVGKKKIIKKKANWQNQLMAPLPEHTDNSYDSKPILLINSLFDVNSGSSSSKLKYDDILIKAEPDDDDYEMAEDDEEKFPIIDPARPYVCQHCGIGFAREKALISHNMIHAGDSAFECPHCHEMFSSELLLDTHMSTRHQRIKNLAKKKKLKTNIKKSIESDKFKTFQCEECDASFTRYNQLKRHHRSIHTKSDGTVKKEVYECELCNLVFRSDEALIAHSDLHNASDEIHSCNTCGEEYTDVNELHSHMKSKHKWSHFCHVCGTAYRDAKSLTKHLLTHSDSTLIHPCSLCHRLFYSSSKLKKHMVSAHYNKEGYDCGDCGESFVDGTSLATHKQTRHGIGRLFPCTQCGKTFTSRSSQQIHIRVHTGEKPYGCRFCWKAFADGGTLRKHERIHTGEKPYVCPVCTKAFNQRVVLREHVRAHHSEGRGRSFECTVCGETLPQSRDLVAHLVMHSDENTAKHRLPNTSTRKYSRRKDTSSTSRSSRKSQHYIADTSPPLSPCK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -