Mfac004445.1
Basic Information
- Insect
- Micropterix facetella
- Gene Symbol
- -
- Assembly
- GCA_027564375.1
- Location
- JAOPUG010000125.1:5629557-5630891[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00019 0.012 17.0 0.5 2 23 55 77 54 77 0.96 2 12 2.8e-05 0.0018 19.6 3.4 1 23 83 106 83 106 0.91 3 12 0.0022 0.14 13.7 0.6 1 23 112 135 112 135 0.96 4 12 4.2e-06 0.00027 22.2 0.3 1 23 141 164 141 164 0.97 5 12 0.00021 0.013 16.9 0.2 1 23 170 193 170 193 0.96 6 12 1.1e-06 7e-05 24.1 1.1 1 23 199 222 199 222 0.98 7 12 0.00011 0.007 17.8 2.4 1 23 229 252 229 252 0.96 8 12 0.012 0.77 11.3 0.2 1 23 258 281 258 281 0.93 9 12 4.6e-06 0.0003 22.1 1.4 2 23 314 336 313 336 0.94 10 12 6.7e-05 0.0043 18.4 0.8 1 23 342 365 342 365 0.92 11 12 0.0036 0.23 13.0 0.1 1 23 371 394 371 394 0.92 12 12 0.0074 0.48 12.0 0.5 1 20 400 419 400 421 0.93
Sequence Information
- Coding Sequence
- ATGGACGAAGATTCCGATGTTAAAACGGAGTTCGTCGATTGTGACGATGCGTCATTCGAAGGTGACGACGATTTATGCTTGGAGCCCGAAGTCAATATACACGATAACGATAATAAAGAATGGCACCCCGAAGTTTCAAATGTCCAAAAAGCTAAGCGGATCTCCTGCGAGCAATGCAACAAAGTCTTTAAAGCGAAACGCTACCTCAGCCTGCATATAAAATCCGTCCATTCAGATGAAAAGCGTTTTAAATGCGAGGAATGTGAGCAGACGTTCACGTATAAAGCGCATTTGAAAAGACACCGCGATTTCGTTCATTTAAATATAAGAAAGTACGCTTGTGATCAATGCGCTCATGCTTTCGGCGATCACTCCACGTTGAAACAACATATAGAAGTCGTGCATCGCGGAATAAAGAGGTTCGTCTGCGAAGTATGCAATAGGGCGTTCGGGCAAAAATCACAGTTGAAGTTACATTTGAATAGTGTTCATTTAAAAAATAATAAATATGCGTGTCCGGAGTGCAAGCATTCTTCTGCGGAAAAGTCGAATTTGGTAAAGCATATCGAGGTCGTGCATAAGAATATGCGTAATTTTGTATGCGAGCACTGCGATCGATCGTTCGGGCAAAAACCGCAGTTGAAGTCGCACATAAACACGGTGCACTTCAAGAATATCACAAAACATTCGTGCCAGGAGTGCGACTGTGTCTACGCACAGAAAGCCGAATTAAAACGACACATAGAATCGAAGCATCGAAAAGTGAGCGTGTTTCTGTGCGAAGAATGCGATATTGAATTCTCGTTAAAAACGGAATTTGTCGCGCATAAAATCAAGGAGCACGGATATAAGAATATAGAAGTTGCGTCCTCGGTGTCTAAAACGGAGAAACCGAAGCGTGAAGTCACAAACTCGCCAAAACCGCCGTCTCAGCAGATTCCTTGCTCGGAATGTGATAAAACATTCACGAAAAAGTGCAACTTGACTACGCACATCAATGCAGTTCACAGGAAGCTCAAGAGATTCCCTTGCACCGACTGTCCGCGCGATTTCGGATACAAAGCACACCTTCAACGACACTTGGAATTCGTGCATCAGAAGCTCAAGAACTACGTGTGCGGGCAGTGTGAGTTCGCGACTATAGATAGAGACAGCTTGAAGAGACACATCGACGATCAACATCGCAAGTTAACGATTTTCATGTGTAAGGACTGTCGATCCACATTTTCACTGCAGTCCGACTTGATCCTGCATAAGAGCAGCGCCGCTCCTGGTTTCATGAAGTGTCCAGCTGCCCGCGCTGTCGATCCCGACTCCCACCCTGATCAAACGTAG
- Protein Sequence
- MDEDSDVKTEFVDCDDASFEGDDDLCLEPEVNIHDNDNKEWHPEVSNVQKAKRISCEQCNKVFKAKRYLSLHIKSVHSDEKRFKCEECEQTFTYKAHLKRHRDFVHLNIRKYACDQCAHAFGDHSTLKQHIEVVHRGIKRFVCEVCNRAFGQKSQLKLHLNSVHLKNNKYACPECKHSSAEKSNLVKHIEVVHKNMRNFVCEHCDRSFGQKPQLKSHINTVHFKNITKHSCQECDCVYAQKAELKRHIESKHRKVSVFLCEECDIEFSLKTEFVAHKIKEHGYKNIEVASSVSKTEKPKREVTNSPKPPSQQIPCSECDKTFTKKCNLTTHINAVHRKLKRFPCTDCPRDFGYKAHLQRHLEFVHQKLKNYVCGQCEFATIDRDSLKRHIDDQHRKLTIFMCKDCRSTFSLQSDLILHKSSAAPGFMKCPAARAVDPDSHPDQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01007622;
- 90% Identity
- -
- 80% Identity
- -