Mfac040672.1
Basic Information
- Insect
- Micropterix facetella
- Gene Symbol
- -
- Assembly
- GCA_027564375.1
- Location
- JAOPUG010000120.1:912258-913637[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6e-06 0.00039 21.7 0.5 1 23 84 107 84 107 0.95 2 13 0.75 48 5.7 0.0 5 18 117 130 116 130 0.92 3 13 0.29 19 7.0 0.2 8 23 149 165 142 165 0.81 4 13 1.5e-07 9.8e-06 26.7 0.3 1 23 171 194 171 194 0.96 5 13 2.5e-05 0.0016 19.8 0.1 1 23 200 223 200 223 0.93 6 13 8.6e-05 0.0056 18.1 0.2 1 23 229 252 229 252 0.95 7 13 8.8e-05 0.0057 18.1 0.2 1 20 258 277 258 281 0.90 8 13 0.088 5.7 8.6 0.0 8 23 294 310 287 310 0.87 9 13 3.3e-06 0.00021 22.5 0.2 1 23 316 339 316 339 0.92 10 13 0.00045 0.029 15.8 0.4 1 23 345 368 345 368 0.93 11 13 4.3e-05 0.0028 19.0 0.2 1 23 374 397 374 397 0.90 12 13 9.8e-05 0.0063 17.9 0.2 1 23 403 426 403 426 0.93 13 13 2.6e-05 0.0017 19.7 3.5 1 23 432 455 432 455 0.98
Sequence Information
- Coding Sequence
- ATGAGTCAGAAAATTATGAACAATTACAACAAAGTGACTGTCAAGATTGAAGATGTCGCTATTAAAACGGATGTCGGTTCTGACGATACAGATTTGAGTATCCATCTAAGCGATTTAATACGAGATGAACGAGATAGTGTGCCTGAATTCGACGAAGACGAAATTCGATTTATAAAGCCAGAACCGATCGAATGTTCTGGAAGTAGTAATATTGGTGATAGTGGTTCTATTGGTGGAAGTGTCAAATCACATGTTTGTCCAGAGTGCGATAGGGCGTTTTCGCTAAAGACTTACCTAAATCGACACATTAATGGTCTTCATTTGAAATTAAAGAAATTTGTGCGTAGAGACTGTGATCGAGCTTTTTCAGAGCAAGGAAATTTAAATAAACGCTTGAACTTAGTTCATAGGAAGTTGAAGGGATCCACATGTGGACAAGACGAACGAGCATTTTCAAGACAAAATCATTTAAATGATCATTTATACGCTGTTCATAGGAAGTGGAAGTATTTTGTTTGTAGCGAATGTGATCGCGCTTTCACAAGGCAAGGAAATTTAAAGAGACATCTGGACTCAGTTCATAGGGAGCCAAATAAATACTCATGTGCAGAGTGCGACCGTGCTTTTACAAAGAAAGAAAGTTTAAAGGTGCATTTAGCTGCCGTTCATAGGAGATTGAAATCTTTTGTTTGTACCGAATGTGAATTTGCTTTCACAAGGCAAGCAGTTTTAAAGAGACATCTGGACTCAGTTCATAGAAAGCTGAGGAAATACTCATGTGGAGAATGCGATCGTGCTTTTACAAAGAAAGAAAGCTTAAAGGTACATTCAGATGGTGTTCATAGGAAATTGAAATATTTTGTTTGTAGAGAAGGTGATATTGGTTTTACAAGGCAAGGTGATTTAAAGAGACATCTGGACTCGGTTCATAGAAAGCTGAAGAAATACTCATGTGAAGAATGCGATCGTGCTTTTACAAAGAAAGAAAATTTAAAGGTGCATTTAGATGCCGTTCATAGGAGATTGAAGTCTTTTGTTTGTAGCGAATGTGAATTTGCTTTCACGAGGCAAGGAGTTTTGAAGAGGCATTTTGACTCAGTTCATAGAAAGCTGAAGAAATACTCATGTGGAGAATGCGATCGTGCTTTTACACAGAAAGGGCATTTGAACGGACATGTGGATGCCATTCACAAGAAAATAAAGAATTACACATGTGGAGAATGTGCTCGTTCATTTGTCTCGAAACAGACGTTGAACAGGCATTTAGATGCTGTTCATGGGAAATTAAAGAATTACGTATGTTCACAATGTAATCGTAGCTTCGGATATCGATCACACTTAATTACGCATTTAAAGAAAACACATACTGTATTATCATAA
- Protein Sequence
- MSQKIMNNYNKVTVKIEDVAIKTDVGSDDTDLSIHLSDLIRDERDSVPEFDEDEIRFIKPEPIECSGSSNIGDSGSIGGSVKSHVCPECDRAFSLKTYLNRHINGLHLKLKKFVRRDCDRAFSEQGNLNKRLNLVHRKLKGSTCGQDERAFSRQNHLNDHLYAVHRKWKYFVCSECDRAFTRQGNLKRHLDSVHREPNKYSCAECDRAFTKKESLKVHLAAVHRRLKSFVCTECEFAFTRQAVLKRHLDSVHRKLRKYSCGECDRAFTKKESLKVHSDGVHRKLKYFVCREGDIGFTRQGDLKRHLDSVHRKLKKYSCEECDRAFTKKENLKVHLDAVHRRLKSFVCSECEFAFTRQGVLKRHFDSVHRKLKKYSCGECDRAFTQKGHLNGHVDAIHKKIKNYTCGECARSFVSKQTLNRHLDAVHGKLKNYVCSQCNRSFGYRSHLITHLKKTHTVLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -