Mfac004421.1
Basic Information
- Insect
- Micropterix facetella
- Gene Symbol
- -
- Assembly
- GCA_027564375.1
- Location
- JAOPUG010000125.1:5366191-5387626[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.4e-05 0.0009 20.6 0.9 2 23 41 62 40 62 0.96 2 21 0.11 7.3 8.3 3.9 1 23 66 88 66 88 0.96 3 21 3.9e-06 0.00025 22.3 0.3 1 23 93 115 93 115 0.98 4 21 2 1.3e+02 4.3 0.4 2 23 120 142 119 142 0.92 5 21 0.0011 0.072 14.6 1.4 1 23 148 170 148 171 0.95 6 21 7.5e-05 0.0048 18.3 1.5 1 23 178 200 178 200 0.94 7 21 0.00054 0.035 15.6 3.4 2 23 247 268 246 268 0.96 8 21 0.0097 0.63 11.6 2.5 1 23 272 294 272 294 0.97 9 21 3.5e-05 0.0022 19.3 1.4 1 23 299 321 299 321 0.97 10 21 0.031 2 10.1 0.2 2 23 326 348 325 348 0.93 11 21 0.0031 0.2 13.2 3.0 1 23 354 376 354 377 0.95 12 21 3.2e-05 0.0021 19.4 1.2 1 23 384 406 384 406 0.94 13 21 0.18 12 7.6 0.4 1 17 412 428 412 429 0.89 14 21 0.0086 0.56 11.8 2.6 2 23 448 469 447 469 0.96 15 21 0.016 1 11.0 2.1 1 23 473 495 473 495 0.98 16 21 0.0072 0.47 12.0 0.5 1 20 500 519 500 522 0.91 17 21 0.12 7.8 8.2 2.8 3 23 527 548 526 548 0.95 18 21 0.00016 0.01 17.3 0.9 1 23 554 577 554 577 0.97 19 21 0.00025 0.016 16.6 0.2 1 23 584 606 584 606 0.97 20 21 3.1e-06 0.0002 22.6 1.3 1 23 612 634 612 634 0.98 21 21 0.0008 0.052 15.0 3.8 1 23 640 662 640 662 0.98
Sequence Information
- Coding Sequence
- ATGATCGCCCCACTTGAAGTTGTCAATACAGTATTCAAGAAAGAAAAAAGTGGAAAGATCGGCAAGATTGTGAAGGCCCAAAACGACGAAGTACGTAACGCGATGGATCTGGAAAATCTGCAGTGCCGCATCTGCTACAAATCGTTCAAGTATCGcgccaacttggccactcacatgaacgaacacttcgttaactacacgtgcgagaggtgcggcaagggattcgcgacgcacggccgccacagaagccatttgagcacgcacaagatcgggacgttcccttgtgacgaatgcggcaaggtcttcgagACGAGGCGGAAACTCGAAGACCACAGAATGATGCACATCAAGAAAATCAAATGCGACTACTGTCCGGATATGTTTAACTCGACGATAAGGAAGCGTTTGCACATGCGCGACGTGCACGACGAGCCGAACAAATACCCCTGTCCGCACTGCGACGCCACATTCATAATGGCCTATTACGTACTGAGACACGTGAAGAACCACCACAGTGTACGAGTGCGCCAGTTCACTTGCGAACACTGCGATAAGGAGTTCTACGATAAAGCCTCCTTGAAAGAGCATTCAGTCGTTCATAGCAACAAAAAGGATTTCTTATGCACTTTTTTGAGAAGCCGCCATTTTACACGAGGTTACTTTCTCCTTTCAGGAAAGGGCGGCAAGATTGTGCCCCAAAATAAAGAAGTGCGTAACGCGATGGATCTGGAAAAGCTACAGTGTCGCATCTGCTGCAAGTCGTTCAAGTATCGCTCAAATTTAGCCACTCATATGAACGAACACTTTGTAAATTACACTTGTGAGCTGTGCGGCAAAGGATTCGCAACGTACAGCCGCCACAGAACCCACTTGAGCACTCACAAGATAGGGACACACCCTTGCGATGAGTGCGGCAAGGTGTTCGGAACGAAGAGGAGGCTGAAAGATCACAGAATGATGCATGTGAAGAAAATCAAATGCGATTACTGCCCGGAAATGTTTAACACGCCTATACGGAAACGCTTGCATCTGCGAGATGCGCACAACGAACCAAACAAATATCCGTGCCCCCATTGCGACGCCACATTCATAATAGCGTGCTATCTGCTACGGCATGTGAAAAATCATCACAGTGTGCGAGTGCGCCAGTTTACTTGCGAGCACTGCGGTAAGGAGTTCTACGATAAAGCCTCCTTAAAAGAGCACTCGGTCGTTCACAGCAACAAAAAGGATTTCCTATGCACCTTTTGTTCGAAAGCCTTCGCGAGAAAGGGTAAGCTCGAAGAGATTATGAAGGCCGAAGAGGAAGAATCGCGTAATGCGATGGACTTAGAAAAGCTCCAGTGCCGCGTCTGCTCGAAGGTGTTCAATTGCCGTCGCAATCTGGCCACTCACATGAACGAACATTTCGTTAACTACACGTGCGAGAAGTGTGGGCAGGGATTCGCCACGTACGGCCGTCACCAAAAACACGCAAGAACCCACACAGTCGGGACGTTCTTATGCAACCAATGTGGAAAGGTGTACGACACAAAAGCCAAATGGCAAAACCACAAATGGATACATTCACAGCCCAACTGCGACCACTGCCCACAGAAGTTTAAATCGCTTCTGAAGAAGCGAATGCATATGCGCGAAGCGCACGGCGAACCGAACAAGTTCCCTTGCCCCCACTGCAACCTCACGTTTATACTGTCAGAATACCTTGCGAAACACGTGAGAAACCGCCACAGTAAACGAGAACGCCAATTCAAATGTGACAAGTGCGACAAAGAGTTTTTCGACAGAGACACGCTCATTGGCCACGCGATCGTCCACAGCACTGCAAAGAATTATCCTTGCAACGTCTGCTCGAAAACCTTCGCGAGAAAGAACAACCTCAGACAACACTCCAAGATCCACCTCAATATAAGAAATTTTATCTGTGCTTATTGCAACCAGGATTTTGTGTACAAATGCACCCTACAGTCACATATGAAGAAGCATGAAAAGAAAATAAAAATAAAATGTTAG
- Protein Sequence
- MIAPLEVVNTVFKKEKSGKIGKIVKAQNDEVRNAMDLENLQCRICYKSFKYRANLATHMNEHFVNYTCERCGKGFATHGRHRSHLSTHKIGTFPCDECGKVFETRRKLEDHRMMHIKKIKCDYCPDMFNSTIRKRLHMRDVHDEPNKYPCPHCDATFIMAYYVLRHVKNHHSVRVRQFTCEHCDKEFYDKASLKEHSVVHSNKKDFLCTFLRSRHFTRGYFLLSGKGGKIVPQNKEVRNAMDLEKLQCRICCKSFKYRSNLATHMNEHFVNYTCELCGKGFATYSRHRTHLSTHKIGTHPCDECGKVFGTKRRLKDHRMMHVKKIKCDYCPEMFNTPIRKRLHLRDAHNEPNKYPCPHCDATFIIACYLLRHVKNHHSVRVRQFTCEHCGKEFYDKASLKEHSVVHSNKKDFLCTFCSKAFARKGKLEEIMKAEEEESRNAMDLEKLQCRVCSKVFNCRRNLATHMNEHFVNYTCEKCGQGFATYGRHQKHARTHTVGTFLCNQCGKVYDTKAKWQNHKWIHSQPNCDHCPQKFKSLLKKRMHMREAHGEPNKFPCPHCNLTFILSEYLAKHVRNRHSKRERQFKCDKCDKEFFDRDTLIGHAIVHSTAKNYPCNVCSKTFARKNNLRQHSKIHLNIRNFICAYCNQDFVYKCTLQSHMKKHEKKIKIKC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -