Mfac002609.1
Basic Information
- Insect
- Micropterix facetella
- Gene Symbol
- -
- Assembly
- GCA_027564375.1
- Location
- JAOPUG010000105.1:1657158-1658456[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.51 33 6.2 0.1 7 23 93 110 88 110 0.93 2 12 7.7e-05 0.0049 18.2 0.5 1 21 116 136 116 139 0.87 3 12 6e-05 0.0038 18.6 0.4 1 21 145 165 145 168 0.90 4 12 8.2e-06 0.00053 21.3 0.3 1 23 174 197 174 197 0.90 5 12 1.4e-05 0.00089 20.6 0.1 1 23 203 226 203 226 0.91 6 12 1.8e-06 0.00011 23.4 0.0 1 23 232 255 232 255 0.91 7 12 0.00059 0.038 15.4 0.5 1 23 261 284 261 284 0.91 8 12 1.2e-05 0.00074 20.8 0.0 1 23 290 313 290 313 0.91 9 12 1.1e-06 6.8e-05 24.1 0.0 1 23 319 342 319 342 0.95 10 12 0.024 1.5 10.4 0.2 1 23 348 371 348 371 0.90 11 12 6.6e-06 0.00042 21.6 0.0 1 23 377 400 377 400 0.91 12 12 1.6e-06 0.00011 23.5 0.3 1 22 406 427 406 429 0.90
Sequence Information
- Coding Sequence
- ATGAGTAGGCAAATTGTGGATATTAACCACAGTGCGACTGTCAAGGTCGAAGAAGAAATAACCATTAAATTAGAGATCAGTTCTAACGATTCGGATTCGAATATTCCTCTAAGCGACTCCATAACATATGAGCAAGGGAATGTGTCCGAATTTGATGAAGGAGAGACGTGTGTTATAAAGCAAGAAACAATTGAAAGTGGGCCGTCCGGAATTACTAATATTGGTGACAGTGGATCTAGTGGAGGACGTATCAAATCACATGTTTGCCTGAAGCGTGACAGGGCGTTTTCGTATAAAAATCGATTAAATCGACACATTAATGAGATTCATTTGAAATTAAAGAAATTTCTATGCAGGGAATGTGATCGTTCTTTTACTACGAAAGACTATTTGAATAGTCACGAAGACGCAGTTCACAGGAAATTCAAGAAATACTCATGTGAAGAATGCGATCGTGGTTTTACACATCAAGGGAAATTAAAAGAACATGTAGTCGCAGTTCACAGGAAATCGTTGAAATATGCATGTGGAGAATGCGATCGGAGTTTTACACATCAGTCACTTTTGAAAATACATGTAGACGCAGTTCACATGAAATTGAAGAAATACTCATGTGGAGAATGCGACCGTGGTTTTGCACGTCAAGCAGATTTGAAAAAACATTTAGTCGGCGTTCACAGGAAACTGAAGAAATATTCATGTGCAGAATGCGGTCGTGCTTTTACACAGCAAGGGAACTTGAATAATCATATAGTCGCAGTTCACAGGAAACTAAATAAATATTCGTGTGGTGAATGTGATAGTCGTTTTACACATCAAACGCTTTTGAAAGTACACGTAGACGCGGTTCACAGGAAATTGAGGAAATACTCATGTGGAGAATGCGACCGTGGTTTTGCACGTCAAGCAGATTTGCAAAGACATTTAGTCGGCGTTCACAGGAAATTGAAGAAATATTCATGTGTAGAATGCGGTCGTGCTTTTACACAGCAAGGGAACTTGAATAATCATATAGTCGTAGTTCACAGGAAACTAAATAAATATTCGTGTGGTGAATGTGATAGTGGTTTTACACATCAATCGATTTTGAAAATACATGTAGACGCAGTTCACAGGAAATTGAGGAAATACTCATGTGGAGAATGCGGCCGTGGTTTTGCACGTCAAGCAGATTTAACAAGACATTTAGTCGGTGTTCACAGGAAATTGAAGAAATATTCATGTTCAGAATGCGATCGTGCTTTTACACAGCAAGGTAATTTGAATAAACATGTATTCGCAGTTCACAGGAAATTGTAG
- Protein Sequence
- MSRQIVDINHSATVKVEEEITIKLEISSNDSDSNIPLSDSITYEQGNVSEFDEGETCVIKQETIESGPSGITNIGDSGSSGGRIKSHVCLKRDRAFSYKNRLNRHINEIHLKLKKFLCRECDRSFTTKDYLNSHEDAVHRKFKKYSCEECDRGFTHQGKLKEHVVAVHRKSLKYACGECDRSFTHQSLLKIHVDAVHMKLKKYSCGECDRGFARQADLKKHLVGVHRKLKKYSCAECGRAFTQQGNLNNHIVAVHRKLNKYSCGECDSRFTHQTLLKVHVDAVHRKLRKYSCGECDRGFARQADLQRHLVGVHRKLKKYSCVECGRAFTQQGNLNNHIVVVHRKLNKYSCGECDSGFTHQSILKIHVDAVHRKLRKYSCGECGRGFARQADLTRHLVGVHRKLKKYSCSECDRAFTQQGNLNKHVFAVHRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -