Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_027564375.1
Location
JAOPUG010000021.1:23875860-23922064[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.7e-14 6.6e-11 43.2 0.1 3 44 660 701 658 703 0.95

Sequence Information

Coding Sequence
ATGATGGCCTGCGGCCCCAAAAAGGACGGAAGTCCTAACGCCGAGTATTTCCAGTCGACAGAGACCCTTGCACAGTTCGATCAGATCAGGGCTTGGTTGCAGAAAAATTGCAAAAAGCATGTGCAGACGGATCCGCCGACGAGGGACAGTCTGGCTCAGCTTGTCGTGCAGTTGATTCAATACCAGGAGCAGAAATTGGGTAAAAACGCGCAGGATCCACCTTTCACAAGGCTCCCTATGAAGTGCTTTATGGATTTTAAGCCCGGAGGGGTGCTGTGCCAGATATTGGCCACGATGTTTCGATACAAGTCGGAACAACGTTGGCGCAAGTTCGATTTCCAGGTTGGTAAGAATCCCTCAAGGAAGGATCTCAACGTACAGATGATGATGGAGATAGAGACATCCCTGATTGAGGCGGAGTGTTTCAGGATGCCCTGCGTCTTCATCCGTTCAGAACTGGACAAGGCCACCTCGAATAAGATCAAGGAGATCATTGTAAATCATCAGGGAGAAATATGCGATGATGAGGATGACGCAACCCATATAATCTATCCAGCTTTGGACCCGTTGGAGGAGGAATATGCGAGACCAGTTATGCGTAGAGATCGCTCGGTCCTGATGCACTGGTACTACTTTCCGGACAGCCACGATTCCTGGGTTAACAACATGGACTTACCTGTCGATCCTCCAGAGAATCCTGTATGGGATCTGATGAAACCGGATCCTTGGAGGGTAACAGCTACCTGGGTCCTCGATTTGGACTCTTACAATGAATGGATGAACGAAGAGGACTATGAAGTCGATGCAAATGGCAAGAAAAAGGTGCATAAAATGAGGCTTTCCGTTGAGGATCTAATGCAGACTGGAAATGGCGGAGAAGGAGGATCGAAAAATAAGAAAAATAAACGAAAACGCTCACCGACTCCACCTCCGATTAAGCATGGCAAGAGAAAAAGTCGGTCAATTGTGGCCACTCCGCAACCTCCCAAACGGAGCCGCGATGAACCCAGCGGGCCCAGCTCCAACAGTGCCACCGCTGCAGGAAGTGCCGACAGCGACGCGGAGCCGGCCAATGAATCTGAAGATGCCCCTACTCCCGACAACCCTCAGGATAAGAATGGCAGTAATAGTCAAACAGCAGCTAGCGCATCTGGTACCAGTAACTCAAATGCTGGCTCAGCTTCTGCAGGACCAGCTACTCCCGCTCAACCGCCAGCAACTCCGGCGGCGACTCCTCTGCAAGAAGACGATGGACATGACGATTCACAGCACGCTAAAACCAGTGATACTAATACCCAGGACATGATTTCAAAAGAGGAGATGGAAGACAATGTCACCGAACAGACTCACCACATAGTCGTGCCATCCTATTCTGCTTGGTTCGACTACAACTCCATACACACCATAGAGAAAAGAGCTCTGCCTGAATTCTTCAACGGAAAGAATAAATCGAAGACTCCGGAAATATATTTGGGATACAGGAATTTCATGATAGATACCTATAGACTTAACCCTACTGAATACTTAACAAGTACAGCCTGCCGCCGCAATCTCGCTGGTGATGTCTGTGCCATCATGAGAGTCCACTCGTTCTTGGAGCAATGGGGACTTCTCAATTACCAGATCGATGCTGACATGCGGCCCACGGCGATGGGTCCACCTCCCACATCGCACTTCCACGTTCTCTCCGACACGCCCTCGGGGCTGCAGCCCGTCAACCCCCAGAGGACTGCACAGCCTTCTCACGCCAGGCCTACAGAAGGTCCGTTGGTGCCGAAGACGGAGAGCGCTCTGCCGAACGGGCAGGAAGCGGTTGGAGCGACGGGGACTCCCCCAGCGGCCCTTTCGCCGGCACCCGCCGCCATCGCAGCCCCCATCAAGACGGAGCCCAACCAAGACCTCGGCACTGAATTCGGACTCAAAATTGACCAGTATAGCAGAGGTAAGCGTAACGTTACCGCCGGCGCTGGCACCAGAGAATGGACCGAACAAGAGACTTTATTATTACTGGAGGCACTGGAAATGTTCAGGGATGATTGGAATCGAGTCTGTCAGCACGTTGGTTCGAGGACACAAGACGAGTGCATTCTCCACTTCTTACGATTGCCGATTGAGGATCCTTACCTGGAAGATGGTGGAAGTGGTGGTGTACTGGGACCACTGGCATACCAAGCGATTCCGTTCAGCAAGGCTGGAAATCCAGTCATGAGCACCGTAGCTTTCCTTGCATCCGTAGTGGATCCCAGAGTCGCTTCTAAGGCAGTTTCCGCCGCTATGGAGGAATTTGCATCCATCAAGGATGAAGTACCAGCTTCCATGTTAGAAGCTCACTCTAAAGCGGCTTCTCGGGACGGGACAGCGGCTGCTCTCGCTGCTAGTGGTATTGCAGGAACTGCTCCAGAAGGAGAAACAGATAAGAAAGAAGATGTTTCGAAAGCTCCAGAATCTATGGAAGTGGACCCGCCGATCCCGGAGAGTCCTGACAGCAAACCCAAAGAAGTGGCCGCCACTCCATCACAGCCTCCTCCATCGGCCACTCCTCCTGAGGATTCAGTCAAAGAACAGCCTACGTCTCCGATTAAAACCGAGGGAGAGACTAAAGCTGAACCCATGAGCGAACTCGAAGTGCCGGCCGCACCGCCCGCCGAGCCGCCCAATGCTGCCGTCCCACCGCCAGCCGCTGCCCCGCCTCAGAGGGCCTAA
Protein Sequence
MMACGPKKDGSPNAEYFQSTETLAQFDQIRAWLQKNCKKHVQTDPPTRDSLAQLVVQLIQYQEQKLGKNAQDPPFTRLPMKCFMDFKPGGVLCQILATMFRYKSEQRWRKFDFQVGKNPSRKDLNVQMMMEIETSLIEAECFRMPCVFIRSELDKATSNKIKEIIVNHQGEICDDEDDATHIIYPALDPLEEEYARPVMRRDRSVLMHWYYFPDSHDSWVNNMDLPVDPPENPVWDLMKPDPWRVTATWVLDLDSYNEWMNEEDYEVDANGKKKVHKMRLSVEDLMQTGNGGEGGSKNKKNKRKRSPTPPPIKHGKRKSRSIVATPQPPKRSRDEPSGPSSNSATAAGSADSDAEPANESEDAPTPDNPQDKNGSNSQTAASASGTSNSNAGSASAGPATPAQPPATPAATPLQEDDGHDDSQHAKTSDTNTQDMISKEEMEDNVTEQTHHIVVPSYSAWFDYNSIHTIEKRALPEFFNGKNKSKTPEIYLGYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHSFLEQWGLLNYQIDADMRPTAMGPPPTSHFHVLSDTPSGLQPVNPQRTAQPSHARPTEGPLVPKTESALPNGQEAVGATGTPPAALSPAPAAIAAPIKTEPNQDLGTEFGLKIDQYSRGKRNVTAGAGTREWTEQETLLLLEALEMFRDDWNRVCQHVGSRTQDECILHFLRLPIEDPYLEDGGSGGVLGPLAYQAIPFSKAGNPVMSTVAFLASVVDPRVASKAVSAAMEEFASIKDEVPASMLEAHSKAASRDGTAAALAASGIAGTAPEGETDKKEDVSKAPESMEVDPPIPESPDSKPKEVAATPSQPPPSATPPEDSVKEQPTSPIKTEGETKAEPMSELEVPAAPPAEPPNAAVPPPAAAPPQRA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01007305;
90% Identity
iTF_01007305;
80% Identity
-