Basic Information

Gene Symbol
JARID2
Assembly
GCA_027564375.1
Location
JAOPUG010000221.1:5136061-5149740[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.1e-20 2.4e-16 60.9 0.0 6 88 1284 1363 1280 1364 0.92

Sequence Information

Coding Sequence
ATGAAGCCTCCGACTCCATACATTCTAGAGGTCATTGCGGTTTGCTTCAAGCCAGACAGTTCGTCGAAGCTACCACAAGAACATCATATAAATCTTACATGTATACAAATTGCAGATATTCCCTCGCTGCCCTCAAAAGCTGAATTATTCGGCGATGATATTCCGTTTCACGAAATTAGCAATAGTAAAGAAGAGGCTCCTAGGCAAACGGCGAGGACATTGACTGTGGTACGATCGTCTGGCGGAATTGAAAACAGAAAACCAATAAAATGCCGATTAAAAGGGGATAAAAAAAGAATATTAGTGAGAAGAAAAGTAAATCTAGCCCAACAAATGTCTCTGAGAAGTAGAGCAGTCCCTTTAGCAAATTTACCAAGCAAAATACAGAAAAAAAATGAAATTAAAGAATCTTCATCAGTCAAAAATAGCCTTGCGCAAATGAGGTTAAGGGGGAAGATTGTGAGTACGAGAAGTAGCAACAATAAACCTATGCCACATATTTCTTTAAAGCAGATTTCTAAAAAGAAAATTGTGAAATGCAATTCTCATAAGGAACCTCAGGATGATGGAACAAGCAGTCCTGCCACAAGATCTGGAATAAGGACTAGAACTACAAATTTATCACGGAGCATTCGAAACGATAGCATTAATACAGAAGACAAGGGGCAAGTTAAAACACCTAAAGAATCAGTTTCATCCCCTATCGAGTCCGAGTATTCGTCAGATGATGAGAAGCCTCTCAAGAAGACTTTTAGTATAAATTTAAATACAGTAAAACGACAAAGCAATAGAAACACTGCTAAAAAACCAAAGGGGGATGAGAATATTCAGATTGGCCGTCCCCCCAGAAAAACTAAGAAAGCAGCTGCTCTTTACATGGAACTATTGGAAGAATCCACCGATGAAAATGCAGACGACTGGAAAATTAAACCTAGTAAATCAAAATCGAGCATCAAGAAATCAGTTATCAAACCCATACATAAGGTGGAGCGTTCTAATGACACTAAGTACAAGGATATGTTAAGAAGCAAACCAAACATTCCTATCTTACATAATAAAAGGAAAATTATCAGTAGTAATAACGCATCGCAGAATAATATTCGAAACTTACGCCTTCGTCGAAATGCTTTGCGTAAAGATGTCAAAAAAACCAGACATCATACAAAAATTACTAAATCACCACCTACTAGCTTTACAAAATTAAAATATCTCAGTCAGAGATCAAAAAGAGATAAACATATTTTTAATAATAAGTCAGCTGATAGTAAAAAAGTTGTGGAAAGAAAAAAAAGCAATGAAACTACAGGAAATGAAAAAAATGATAACCAATCTTCGACATCCACTGAATATTTTACGGCCTCTACCAAAAAAGACGAGCCCAATGTATTTCAGCTGATTCAGGCTCCTGAAGATGCTAAGAAATTTTCTAAACAGCGACAAATTGAGAAATGGTTATCAGACTCGCATTTGAGCTGTAACGAACCTCTGACGTCATCCGACTCTACCAATTGGTCAGAAAACATAGAGGGAAAGAACAGTTACGATAGCAAGAAACTAGTAGAGGGGTTTAGCAACATCACACTTGACACTTCACAAGATGAAGAACAGGAGGAACGAACCGAACAAAGACCAAAGAATAAGGAAAAATCGAGCAGATTATTTTTTACAAGTGCTTTTTTTCATTGCGATGAAAACAATGACAAAAGCTTTAAGAAGACTGAAGAAATAACTACAAACGTATTCAGCAACAAGGATAAGATGCTAGATAGTGTAAAAAATAAAAGTTTATTTTGCAAAGGGAATGATGCAAAATATCCACATATGACAGAAGCTTCTGTGCTATGCATCGACATCGGATTTCAGATGAAAAACAAATCGGACGATTTTAATAATACAAAACCATCTGAAAATGATGTCAAATTGACTAGAGTGAGTCGTTCCAATTCTGCCTTGCGGCTTACAGAATCCAACTGTGATGTATATCAATCAGTGGACAAGGAGATTAGTCAGAAAGATGAAATTGCAGAAGAAAAGAAAATATCAGGAGAAAAGAAAATACAAAAAGAACTGGAATTGAAAAGCCATCAAAGCGACCACAACGAAGCGTGTACCGATGAGCCTATTAAATTTTGCGATGCTTCTGACAAACCTCAACGTGAAGAACATAATTTATCAGTTGAAGAATCAAGAACCCCTAAGAATCCCACTGGATTAAAACAACGCGTAAAGAAGGAGAATCCAAAATCAAAATTAAAATCAAAAGCCAATACAAGATTCAGAAGTAAGCAATTGAGTCATAATTTAAAAGTATGCAGCAAGGTGCCGGTTGTCAATTTGAGTCCTTTAAAATCCAAAGATGGAAAGTTTGTTATCAAAACTCCAAGTATAAATGTGTTTAATTTTGATATAGTAAATGAGGAAAAGCGAAACTTTGATGATGAAAAAAAAGTAGCCTCTGAAGAGTCTAGAGAGCAATGTGATGAAAGTACTCAGCTTAATGGAAATGTTGAGCCCTTTGAGAATTTAAGGCTCTCATCAGAAGAGAATGCGCTCATTGCTTTACCGGCTAGCATTACCGATACCTACGAATCCTTAGCACCTGAGCCCACCAATATTTCATCTAATATTGAGACTAAAGCAAGCATGAAATTGACTGATGATGCACCTGCTAGATTTAAGTCATTTTCTGAAGAAGCAATTCAATCTAAGTCATATCTTAATAAACCAAATAAACAGCCAATCTATAAGCAAAATTTGGAAGGGGATATTATTCCCAATCAAGAAAATGTATATGATTTTGAAAATGAGATTGATATATCTTTGCCCTCTAAATTTAACGACGATTACCTAGTCACTTGCATGATGCCTTTGTTTGGAAGTGATAAAAAACAAGATGCGCTGCATAGTTCTAATTTATTTAATTCGTCGAATGCGGATGTTTTGATAGATTCCGTATCGTCTATGTCCATCGACAACTATCAAAGTAGTATGGTCGAAATTCTCGATGATCCAAGTGCCGATAACACAAAATTCGTCAATTTAACCAAACCAGAAATTAAGGAAAAATCTCCATCTCCAGAAAGCAATGCTTCGAAAATTCAACAAATAGATTCACTATTACAAGCAGAAATTTCCCAGAATTCAAACAGTTCAGATTCTGAATCCCTGCAGAAGCCGTCTGCAGTCGAAGTGGTCAAGGCTAATGATCATGAGAATGAGCTCTTTTTGATTCCGCTATCGACTTCTAAGAAGAATGCCAATATGGAGCGTCTCATTCAAGGTGTAGCTGTCAAAGTGGGGGGCGATGGGCCTAATCAGAAAGTAATCATGAGAGCTAAATTGATCAAACGAACTACTTTACAAACAGTCGAATCTGAACAGTCAAAAAGCTCACAAACACCAGAGTCATCCGTTGGAGAATTAGATACGGTTGCAGAAGCGAGCGAACAGCCACCAGTCATCGCTCCGATTTCTGATTCACATGGAAATATTGATACGGTAATCGCAGTAAGTGAACAATCGACGGGCTCTCAAAAGCAGTGGCGTCGAATGAAGAGAGCGAGAAATGAGTCGGAAATCCAGCCTAGTAATAACACAGCGTTTCCCCAAAGGGATGATCCCGCTCAGGTGGTCGAGACGCCAGAGTTTCATCCGACAGAACGTGAATTTCAAGATCCGATGGAATTTATCGAACGAATCACTCCAGTGGCCGCACGATACGGTCTTTGTAAAATTATCCCTCCGCTGAGCTTTAAGCCAGAGTGCAAAATTTCTGAAGATATGCGTTTCACGGCTAACAATCAGTATTTGCATAGAATGCTGCATAGGTGGGGACCATCTGTTAGGGAGATGTGTGCGATTAAGAAATACTTAGCCACTCAGAGCGTTTCCTTCAAGCAGCCTGCTTTGATTGGCGGTATTGAAATAGATTTACCGAAATTGTACCGGGTTGTTCAAAATTTAGGTGGATTAAAAGAAGTTATAGAGAAGAAGAAATGGCCTCGAGTGGCTGAAGACATGAAGCTACCTCATTCCAGGCACACAATCACTCGATTAGACGACATTTACTGCAAATACATCTTACCGTATCATACATTATCGCCAGAGGAACGCCAGAAAATATTTGACAAAGTTGACAAACAGTGGAAAAAACGGGAAATGCTGAAGACTAAAACTGCATCTGGTAGCTCTTCGGATTCAGAGGAAGACGATGCTTTGGATGAAGTAGAGGAATGTGTCACGAAGGGAAAATCAATGCCTCTCAAGAATTTCTATAGGATAGCACGAAATGCCATGAACATGTGGTTTCCAATGGAAGGTACTGCTACGTCAAACTTACAAGCGGAAATATCACAACCTACAGCAGATGAAGTTGAATCTCAATTTTGGCATTATGTGACGACTGGTGAAAATCACATTTGCGTCAATTCCGGCTCTATTGATTCGTTCATGTGGGGCTATGGCTTTCCCAGCGTGAAAACAAAGACTAGTCCAATGTCAAGACATCCTTGGAATTTGAAGCAAGGTCTAATTGCTGCTAATTGGCGTCCACTTGTCCTCGCGCTGAGTTGGCGGTGCCCAGTTAGAAGTGCCGAGTTGGCCGCATTCACTTGTCCCATTCCTCTCCTACGCCACTGTCTGTTAGTGCCAGCGACTGGCATCATTGCATTCCAAAACATCATCCACATCTGTGCTACAGCCTGGGCTAATGAGCTCTCATTTATCATTCAACTGCCAACTGCCACTATGGACATGGGTCCAAGGTATGGCATTCCAGACAGCCAAAGTGAGAAATTACGGCATGCTCTCTCTGAAATTGTTCCCGGCTACAGCCAAGACAAGAAGATATGGTTACCCTCGGATATGACAATGGTACCTCCATCACTCTTGACAGAGCACAGTGTGTCGTTGTGTAGAACCGTTCAAAAACCAGGAGAATTTATTTTGGTATTTCCGAAAGCTTTTATATCGAGTATATGCACTGGCTATCTTGTATCGGAGAGTGTATATTATGGAACTTTTAATTGGCTGAAAACTGCACACATGGACTTTAAGGACATTACTGAAAGCCGCGAGCCAATGGCGTTTTCATTTGAGCGTTTAATTTTGTCTCTGGCAACAAGCTCAAAAACACAACCTCCAGTTTCTGATAAGTGTCTTGTAGAGGGTTGCCATCGTCCTCCTCCCGGATAG
Protein Sequence
MKPPTPYILEVIAVCFKPDSSSKLPQEHHINLTCIQIADIPSLPSKAELFGDDIPFHEISNSKEEAPRQTARTLTVVRSSGGIENRKPIKCRLKGDKKRILVRRKVNLAQQMSLRSRAVPLANLPSKIQKKNEIKESSSVKNSLAQMRLRGKIVSTRSSNNKPMPHISLKQISKKKIVKCNSHKEPQDDGTSSPATRSGIRTRTTNLSRSIRNDSINTEDKGQVKTPKESVSSPIESEYSSDDEKPLKKTFSINLNTVKRQSNRNTAKKPKGDENIQIGRPPRKTKKAAALYMELLEESTDENADDWKIKPSKSKSSIKKSVIKPIHKVERSNDTKYKDMLRSKPNIPILHNKRKIISSNNASQNNIRNLRLRRNALRKDVKKTRHHTKITKSPPTSFTKLKYLSQRSKRDKHIFNNKSADSKKVVERKKSNETTGNEKNDNQSSTSTEYFTASTKKDEPNVFQLIQAPEDAKKFSKQRQIEKWLSDSHLSCNEPLTSSDSTNWSENIEGKNSYDSKKLVEGFSNITLDTSQDEEQEERTEQRPKNKEKSSRLFFTSAFFHCDENNDKSFKKTEEITTNVFSNKDKMLDSVKNKSLFCKGNDAKYPHMTEASVLCIDIGFQMKNKSDDFNNTKPSENDVKLTRVSRSNSALRLTESNCDVYQSVDKEISQKDEIAEEKKISGEKKIQKELELKSHQSDHNEACTDEPIKFCDASDKPQREEHNLSVEESRTPKNPTGLKQRVKKENPKSKLKSKANTRFRSKQLSHNLKVCSKVPVVNLSPLKSKDGKFVIKTPSINVFNFDIVNEEKRNFDDEKKVASEESREQCDESTQLNGNVEPFENLRLSSEENALIALPASITDTYESLAPEPTNISSNIETKASMKLTDDAPARFKSFSEEAIQSKSYLNKPNKQPIYKQNLEGDIIPNQENVYDFENEIDISLPSKFNDDYLVTCMMPLFGSDKKQDALHSSNLFNSSNADVLIDSVSSMSIDNYQSSMVEILDDPSADNTKFVNLTKPEIKEKSPSPESNASKIQQIDSLLQAEISQNSNSSDSESLQKPSAVEVVKANDHENELFLIPLSTSKKNANMERLIQGVAVKVGGDGPNQKVIMRAKLIKRTTLQTVESEQSKSSQTPESSVGELDTVAEASEQPPVIAPISDSHGNIDTVIAVSEQSTGSQKQWRRMKRARNESEIQPSNNTAFPQRDDPAQVVETPEFHPTEREFQDPMEFIERITPVAARYGLCKIIPPLSFKPECKISEDMRFTANNQYLHRMLHRWGPSVREMCAIKKYLATQSVSFKQPALIGGIEIDLPKLYRVVQNLGGLKEVIEKKKWPRVAEDMKLPHSRHTITRLDDIYCKYILPYHTLSPEERQKIFDKVDKQWKKREMLKTKTASGSSSDSEEDDALDEVEECVTKGKSMPLKNFYRIARNAMNMWFPMEGTATSNLQAEISQPTADEVESQFWHYVTTGENHICVNSGSIDSFMWGYGFPSVKTKTSPMSRHPWNLKQGLIAANWRPLVLALSWRCPVRSAELAAFTCPIPLLRHCLLVPATGIIAFQNIIHICATAWANELSFIIQLPTATMDMGPRYGIPDSQSEKLRHALSEIVPGYSQDKKIWLPSDMTMVPPSLLTEHSVSLCRTVQKPGEFILVFPKAFISSICTGYLVSESVYYGTFNWLKTAHMDFKDITESREPMAFSFERLILSLATSSKTQPPVSDKCLVEGCHRPPPG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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