Basic Information

Insect: Micropterix aruncella
Gene Symbol: Prdm1
Assembly: GCA_944547385.1
Location: CALYMV010003906.1:99712-106495[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 7.4e-05 0.0045 18.5 2.5 1 23 857 879 857 879 0.99

2 5 2.2e-05 0.0013 20.2 5.1 1 23 885 907 885 907 0.98

3 5 4.6e-06 0.00028 22.3 4.3 1 23 913 935 913 935 0.98

4 5 0.15 9.1 8.1 3.1 1 23 941 963 941 963 0.97

5 5 0.00026 0.016 16.8 0.1 1 22 969 990 969 990 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	7.4e-05	0.0045	18.5	2.5	1	23	857	879	857	879	0.99
2	5	2.2e-05	0.0013	20.2	5.1	1	23	885	907	885	907	0.98
3	5	4.6e-06	0.00028	22.3	4.3	1	23	913	935	913	935	0.98
4	5	0.15	9.1	8.1	3.1	1	23	941	963	941	963	0.97
5	5	0.00026	0.016	16.8	0.1	1	22	969	990	969	990	0.96

Sequence Information

Coding Sequence: ATGGAGGAGTCACCGAGCggctgcggcggcggcggcgttgCGGCCGCAGCGGACGGCGTTCGCGGCAACGGCGGCGGCAGCGGGACGGCGGCGCCGGGcgggggcggcggcggcgctTCGTGCCCGAGCCCCGGCGCATCCTATGACGTCACGCGCATGGCGGAAGCGGAGTTCGAGCGGCTCACGGTGTACATCGTGCCCGACGTGCATTGCGCGGCCGGCGTGCCCGGGCGCGCCGAGCGCACGCTGCCGCGCAGCCTCGCGCTCAAGCCCTCCGCCGTCCTCTCCACCCCCAACACGCCGaCCGAAGGCGTTTGGAGCACTGGCGTAATACCCAGAGGCACTCGATTCGGTCCGTTTGAGGGAACGAGAACTCCCAACTCGCCCGACAACAAAGTCTCTTGGCGCTACTACTGGAGAGTGCAAGAAACTGTTAGACATCACACTTTTGGGAATATTAAGATCTTTAAGGATAACGACTACTACTATTTGGACGGATCCGATACGAGTATAGCGAACTGGATGAGATACGTCGCGTCGGCTTATTCGTTTTCCGTTATGAATTTGGTGGCTTGTCAGCACGGGGAGCATATCTACTTCTATACTATCAGGGATATAATGCCCAGCGAAGAGCTGATGGTGTGGTACTGCAAGGATTTCGCTAAAAGGTTAGGCTACGACATCGACCCCGAGCGAGCGACCTACAGCATATGCAAAGAGGAAACGATCAAGAAAGCGTACGGCATTCCACCCGCGCCGGTTCACCCGGAAATAGCGTTCAACCACATGAAGTACGTTCTAGGTCTATCGCATCATAAAGATTTGCTGCGAACGGATACTGCGTCGCAGCCCCAGCAGAGGATCAAGCGAGAGACTCGGATAGTCACGAGGAAGGAACTTCCTCCACCGACAAATTTAAACATTAGAGATTCCTCTCCCGTGTTAGTTTATGCCAAAAATGAGACTACTCCTATGCTGATAGACGAAAGACCGCCTTCCCCGGTGATAATAGAGCAGCGACAAATTTCTCCTCTGAGGATCCACCATAGAGAAAATTCTACGATTATAATACACCAGCAAAAGGAGACGACGTCCCATGTGACGACGATTCACCATCACAGCGAACAGCAGATGCTGCGGTTGAGATCTCCCGGCGGAAGCGGAGTGTCCGCCGGGGGAAGCCACCAGCAGCACGCGCAGAGCCCGAACAATAAGGATCGGAGCGCGTCGCCGCAAACCTCtccgcagccgccgccgccgcgggaCCTCCGCGATCCCCGCGACCCCCGCGACCCCCGCGACCCCCGCGACCCCCGCGACCCCCGCGAGCCCCGCGACCCCCACTACGAACACCAGCTCACGCCCGCCGACGGCTCCATCCGTTCCGACGAGGGCTACCACAGCAACGGCTACCACGACGACGGCTTCACGCCGCCCGAAGACTCCAGCGACTCCGATTCGGAAAACAACTACGTACTAGACTGTTCCAAAAAAACAAACGCCCCGAAGGAAACGACCGTCATCGTCCAGAAAGCAGTAGATATGACCGAAATGCACAGGAACGAATACagaaaagtcaaaataaaaatgccGCGCGCCTatcattacaaaaataacaaagacgcGGATTGCGACAGCGAAAAAGAGTTGATCATAGTTGAAGAGCCTATGGAGGAAGTGATTCAGGCGTCGCCGTCGCCGCCGCGCCGGGACCTCGCGACTTCGACGGTTATAGTCTTGGAGTCTTCCCTGAATAAGCCTTACTACGAGGCGGAGACTTCGTCTCCGCCGCCGCCGGCATCGTTCATGAGGTATACTCCCCCCAGCTCTAGCATTTTAGAAACCATCCTCACCGGTAATCGTTTAGACACAAATAACAACGATTATAACCGAGGACAGCCAAATGCTACTCCTCCGCCGACTTCCCCTACCGAAATGGCGTATTCGTACAAAAAGAGCCAAAGATACGGCAACGCTTGTAGTCCGGATTCCAGCTCGAATTTAGCGAGTCCGGGAGTTTTACCCCCGAATCAACAAATTCTCATTCCGATCGACCATCAGCGGTCGCCGTCGCCGCCCCCGACGGCTATTATGTATTCCTCCCCGTCCCCTCAAATGATTCCTCATACGACAGAGATACGCGAGATACGGGAGATTCGCGAAATCCGAGAAATGAGATACGAAAGCCACCCATCGCCGAACTACCCGTACGGAATGTACTCCCCGCCGAATTCGACGATCGTAACGCAACTCGGATCTCCGCCGAATAATTATTCGCCGCCGATCTCGTCGAGTCACCATTATGAAAGGCACGCGCAGCTGCCGACATCCTCCAGCGTGATAACCCTGAAGAACTGTTCCCAGCTGAGTCTGATCCAGAACCAGCAGCTTCTACACGCGCTGCCGCCGCTGCGGCACTTGTCTCCCTCCCGCCACACGCCGCCGGGAAGCATGAGCCCCGACGGCTCGTGCAATCGCAGCATGAGCCCGCTCAGCCCGAACTCGCAAGGATCGCGCGGATACAGGAGCCTACCCTACCCGCTGAAGAAAAAAGATGGAAAAATGCACTATGAGTGCAACGTTTGCTGCAAAACCTTCGGACAACTATCGAACTTGAAAGTACACTTACGAACGCATTCGGGAGAGCGTCCTTTCAAGTGCAACGTCTGCACCAAATCGTTCACCCAACTCGCCCACTTGCAGAAGCACCACCTCGTGCACACCGGCGAAAAACCCCACCAGTGCGACATATGCAAAAAGCGATTCTCCTCCACGTCAAACTTGAAGACTCACCTGAGGCTGCACTCGGGTCAGAAGCCGTACGCCTGCGATCTGTGCATGCAGAAGTTCACCCAGTTCGTCCACCTGAAGCTGCACAAGCGGCTGCACACGAACGACCGGCCGTACGTGTGCCAGGGCTGCGACAAGAAGTACATTAGCGCGTCGGGGCTTCGGACCCACTGGAAGACCACCAGCTGCAAGCCGAACAACATCGAAGAGGAACTCGCGATGGCGAACGCCGCCAACACTGAATGTCTCGGCAACGGCGAGAAAGACTGCACGGAGGCGGAGGGCCGCGACGCGTTCGACGTCCACTCGCTTTCGCGCGCGATGCCGGCGGCGGGGAGGCTGCCGCCGCTGCCGCCGATGCCGATGCAGCCGATGCAGCCGATGCAGCCGATGCAGCCGATGGGCGGCATGGGCTCGATGCCGCCGCATCTGCAGCCGCACTTCATGCAGCGCAGCCGAAGCCCGCCGCGCGGCCCGCACGCGCCGCACGCGCCGCACGCACCGCACCCGCCGCACTCGCCGCACCCGCACCGCCTCGACGCGtaccgcggcggcggcggcggcggcggcggcggcggcggcggcggcggcggcgaccCCGCGAAGCCCGCGTCGGCGGCGCTCTACGCGACGCGCCAAGTCATCGGCCAGAACGGCGAGACGCGCCCGAGCGTCATCGAGTCCAGCCAGCCCCTCGTCATCGAGTGCACCTAA
Protein Sequence: MEESPSGCGGGGVAAAADGVRGNGGGSGTAAPGGGGGGASCPSPGASYDVTRMAEAEFERLTVYIVPDVHCAAGVPGRAERTLPRSLALKPSAVLSTPNTPTEGVWSTGVIPRGTRFGPFEGTRTPNSPDNKVSWRYYWRVQETVRHHTFGNIKIFKDNDYYYLDGSDTSIANWMRYVASAYSFSVMNLVACQHGEHIYFYTIRDIMPSEELMVWYCKDFAKRLGYDIDPERATYSICKEETIKKAYGIPPAPVHPEIAFNHMKYVLGLSHHKDLLRTDTASQPQQRIKRETRIVTRKELPPPTNLNIRDSSPVLVYAKNETTPMLIDERPPSPVIIEQRQISPLRIHHRENSTIIIHQQKETTSHVTTIHHHSEQQMLRLRSPGGSGVSAGGSHQQHAQSPNNKDRSASPQTSPQPPPPRDLRDPRDPRDPRDPRDPRDPREPRDPHYEHQLTPADGSIRSDEGYHSNGYHDDGFTPPEDSSDSDSENNYVLDCSKKTNAPKETTVIVQKAVDMTEMHRNEYRKVKIKMPRAYHYKNNKDADCDSEKELIIVEEPMEEVIQASPSPPRRDLATSTVIVLESSLNKPYYEAETSSPPPPASFMRYTPPSSSILETILTGNRLDTNNNDYNRGQPNATPPPTSPTEMAYSYKKSQRYGNACSPDSSSNLASPGVLPPNQQILIPIDHQRSPSPPPTAIMYSSPSPQMIPHTTEIREIREIREIREMRYESHPSPNYPYGMYSPPNSTIVTQLGSPPNNYSPPISSSHHYERHAQLPTSSSVITLKNCSQLSLIQNQQLLHALPPLRHLSPSRHTPPGSMSPDGSCNRSMSPLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCMQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNIEEELAMANAANTECLGNGEKDCTEAEGRDAFDVHSLSRAMPAAGRLPPLPPMPMQPMQPMQPMQPMGGMGSMPPHLQPHFMQRSRSPPRGPHAPHAPHAPHPPHSPHPHRLDAYRGGGGGGGGGGGGGGGDPAKPASAALYATRQVIGQNGETRPSVIESSQPLVIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -