Maru004853.1
Basic Information
- Insect
- Micropterix aruncella
- Gene Symbol
- -
- Assembly
- GCA_944547385.1
- Location
- CALYMV010000695.1:318304-337882[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.039 2.3 10.0 0.1 1 23 150 173 150 173 0.93 2 12 0.027 1.7 10.4 3.2 1 20 177 196 177 197 0.97 3 12 0.00049 0.03 15.9 0.1 3 23 206 226 205 226 0.97 4 12 0.016 0.95 11.2 2.7 1 23 512 535 512 535 0.98 5 12 1 61 5.5 0.3 1 21 544 564 544 565 0.89 6 12 0.15 9.3 8.1 4.2 1 23 573 595 573 595 0.97 7 12 0.0041 0.25 13.0 0.9 1 23 632 655 632 655 0.95 8 12 4.4e-05 0.0027 19.2 3.5 1 23 661 684 661 684 0.96 9 12 1.2e-05 0.00073 21.0 0.3 2 23 696 717 695 717 0.97 10 12 0.00027 0.016 16.8 1.0 2 23 724 745 723 745 0.95 11 12 3.6e-06 0.00022 22.6 3.6 1 23 751 773 751 773 0.98 12 12 0.019 1.1 10.9 0.2 1 21 779 799 779 800 0.90
Sequence Information
- Coding Sequence
- atgGACGGCGATTTCTCATCCAATTTTGATAAGATTTGTCGAATATGTTTGCTCGAATCGGATGTATCGATAAATTTGTTTGACAGACACGTTGGGGAGGAGTTATTAACTCTATTATTGTGCTTCGAGATTCAGCAAGAAGAGGGTCTTCCCGGTAAGATCTGCCAAGTGTGTTTGGAACAAATGCTGGTCGTGAGGGATTTTAGAAGAAAATGCGAAACATCCAATTCGGCCCTCCTCAAATGGCTTAAAAAAGATATCACTTCGAAAATCGACACCAATATAAATTTCTCAGATATCGAAAAACCGTTCACGCCGGAGGAAGGATTCATATCACAACTGTTTGATTTTGGtacTGGAGATGCCATGATGATCGGCGATGGCGTTACGATAAAAAAAGTGATCGCAAGCGATTGCGAGCCGAGCGATTCTTCATTCTACTTTCAATACAATTGCGACATCTGTGAAGATTCTTTTCCGAACTTTGCAGATCTGACAGACCATATAGTAAACAAACACAGCTCGCTATACACATGTAATTTGTGTAAGAAGCAGTGTCAAACTTCATTTGAATTAACAAAACATCAAGTCTGCCATAACAACAATGAAAGAAATTGTCCCTTCTGTCGAGAAATGTTTGTGGATCAAGATGCTTTAGAAAATCATTTATatACCCATGTTGAGTCGTCGACTCACCACTGCACTGAATGTGCTTGCTATTTTATGACACACCTCGATTTGTCGCAGCACATCCACAATCTCCATCCGAAGGAAATTCAAATGTGCGACAACCTCAACAACAACAACTACACCGATGAAATACTCAGCGACTTTGATTTTCTGACGACCGAGGCTAAGACGCCGGCCGACATTTCTTTCGATGAGAGAATCATCGAAGACGCCAGTTCCAATTTCAACATTTCGAGCTTCAGCGACGATTCAAAGTTGAACAACTTTCTCGGCGATTTGATTAATGAGAACTTGGCCAAGTTGAACGCTGGCGATATCGATAAAGAAATCTCTTGCAAAGGCAAAGCGAAATCGGTggttaaaaatatttccatGATGAAAGATATTTTTCGACGGTCGTCGACGCCGATCGAATTAACAAACGCCCTCGCAAACAGTCCAAACCAGCagtataatgaaaaatatatggattttgagaaaaaacgaaaaactaaaccGATTGTTTCTAAGACACCAACAACTCTAAATGAATCTCTAAACTCTAAGGCAGTCTCAGATGAAAAAACTATGAATTTTGAGAAGAAAGGAAAAGCTGGGACCCTTTTTTCTGAGAAACCAAAAATGTTTAGTCCTTACGATGATTTAGTAGTTTCAAGTGAAAAAACTGCGGATATTGAGAAACAAACGATTGTTTCTGAGAAACATAAACGTCCAAGTCCTTGCCACGACTTGGTAGTTTCAAAGATACCGCCGATCAGCCCAACCCCTGAAATAAACATCACCTTACAGCAAAATGTTACAGTACACAAGAGAAAAAAATCTTGCAAACCGGGTCGGGATTTGTTTCAATGTCATTTGTGCTCATTCGAATATGTGAAATATCCCAGCTATAGGCAGCATATGAGGATTGAACATCAATTCAATGTTCCAATTGTGCCCTTCTCATGTGCTAACTGCGGCAAAACATGGCGCAAACGCAATTTAATCATCAAACATGTCAAGAGATGCAAGTCTCAGCGCCAAAAACACAAATGTCAGCAGTGCAAGAGGGAATTCTGGAGGTTCAACTCTTTCACAGCCCATATGAATCTGCATGCCGCTCAGTTGAAGAAAAAAAGAACTAACAATATTCTCAGGATAAAGAAGGAGTTGCTCAAAGAGCAGGTGAAACCACAAAAACAACTGGCAAAACCTAAAGCGATATACACTTGCGATCAATGTGAATTAGTATTCAATCTTAAAAAACTGCTCCGACAACATTTGGGAAAGTATCATATGCGAGTGACAAGATACATTTGCGACGTTTGTAAGAAGGAATTCAATAGAAAGAACTCCTTGTGCAACCACATGAAGTATATTCACGGGATAAACCACTCAGAGTCAAAATCTAATATTGTATGTGTACAATGTGGTAAAACCAGCAGCAACAAGTCTAACATGGCAGTACATATGAGACGGCACAGCGGCGTGAAGACCTGCATCTGCAAAATATGCGGAAAGGGGTTCGCAAGGATGACAGATCTAAGAGTTCATAATATGTCGCACACCGGGGAACGTCCGTTCACCTGCTCAAGTtgcaataaaacttttacaaaaTCGGATAAGCTTACTCGGCATCAGCGGATACATACTGGAGAGAGACCATTCACATGCAATAAATGTGGACAGACATTCGCCTTCAGCGCACCATACCTTGGGCACATAAAGCGAGAAATCTGTCTAAAGAGATCTGCTGCTTTAGACAAAGGAAAGGATACACTTACctag
- Protein Sequence
- MDGDFSSNFDKICRICLLESDVSINLFDRHVGEELLTLLLCFEIQQEEGLPGKICQVCLEQMLVVRDFRRKCETSNSALLKWLKKDITSKIDTNINFSDIEKPFTPEEGFISQLFDFGTGDAMMIGDGVTIKKVIASDCEPSDSSFYFQYNCDICEDSFPNFADLTDHIVNKHSSLYTCNLCKKQCQTSFELTKHQVCHNNNERNCPFCREMFVDQDALENHLYTHVESSTHHCTECACYFMTHLDLSQHIHNLHPKEIQMCDNLNNNNYTDEILSDFDFLTTEAKTPADISFDERIIEDASSNFNISSFSDDSKLNNFLGDLINENLAKLNAGDIDKEISCKGKAKSVVKNISMMKDIFRRSSTPIELTNALANSPNQQYNEKYMDFEKKRKTKPIVSKTPTTLNESLNSKAVSDEKTMNFEKKGKAGTLFSEKPKMFSPYDDLVVSSEKTADIEKQTIVSEKHKRPSPCHDLVVSKIPPISPTPEINITLQQNVTVHKRKKSCKPGRDLFQCHLCSFEYVKYPSYRQHMRIEHQFNVPIVPFSCANCGKTWRKRNLIIKHVKRCKSQRQKHKCQQCKREFWRFNSFTAHMNLHAAQLKKKRTNNILRIKKELLKEQVKPQKQLAKPKAIYTCDQCELVFNLKKLLRQHLGKYHMRVTRYICDVCKKEFNRKNSLCNHMKYIHGINHSESKSNIVCVQCGKTSSNKSNMAVHMRRHSGVKTCICKICGKGFARMTDLRVHNMSHTGERPFTCSSCNKTFTKSDKLTRHQRIHTGERPFTCNKCGQTFAFSAPYLGHIKREICLKRSAALDKGKDTLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -