Maru026912.1
Basic Information
- Insect
- Micropterix aruncella
- Gene Symbol
- -
- Assembly
- GCA_944547385.1
- Location
- CALYMV010005426.1:65338-66498[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00072 0.043 15.4 2.1 1 23 74 97 74 97 0.90 2 11 3e-06 0.00018 22.9 1.1 1 23 103 126 103 126 0.96 3 11 2.4e-06 0.00015 23.2 0.4 1 23 131 154 131 154 0.92 4 11 0.0039 0.23 13.1 0.1 2 23 161 183 160 183 0.89 5 11 0.0051 0.31 12.7 0.1 1 23 189 212 189 212 0.91 6 11 0.0019 0.12 14.1 0.1 1 23 218 241 218 241 0.97 7 11 3.7e-06 0.00023 22.6 0.3 1 23 246 269 246 269 0.95 8 11 2e-05 0.0012 20.3 1.4 1 23 275 298 275 298 0.96 9 11 0.0061 0.37 12.5 1.3 1 23 304 327 304 327 0.89 10 11 0.0017 0.1 14.2 0.1 1 23 332 355 332 355 0.90 11 11 0.00043 0.026 16.1 1.6 1 20 361 380 361 382 0.95
Sequence Information
- Coding Sequence
- aTGGAGCAATTAGGAACGATCAAAGTGGAGATTGTGAAAGTCGAGGAAGAACCAAGCAATTCTGATGCGGGGGATGCCATTTTTGATTTCAAAGAAGAAGCAATCCGCTCCATCAAACCCGAACGAAGCAACTCCGCTGAAAAGGCAGTTGAAGAAGGCGCAGAAAAGGATACTGTTATGAAGGAGACGAAAGCGCTGGCGACGCCGAAAGGAAAGAAATTTATATGCAGCGATTGCAACCACGGATTTCACACCAGGTACAACCTGAATAATCATGTCGATGCGGTGCACAAGAAACTGAAGAGACACGCCTGTGAAGAGTGCGACAAGGCATTCACGCAGACTGGACATTTAAGAGCCCATGTCCAGACAGTCCATCGCCAGCAGAGGTTTGCATGTCGGGAGTGTGATAAAGCCTTCTCTTCTCGCAGCAACCTGAAAGCCCACGCTAATTTCGTCCACCGACAGTTGAATACAGTGACTTGTGGTCTATGCCAGAAGGCGTTTCCCAACCAGCGAGCGTTCAACTCACACGTCGACGGAGTACATCGCCGATTGAGAGAGTTTCAATGTGAGCAATGCGCGCAGGCGTTCTTCAAACAAGACGCTCTGTCCAGACACGTCGACGCCGTCCATCGGAAGCTCAAACAGTTCGTTTGCAATACATGTGGTCGCAATTTCGGATGGCGCGCCAATTTATTAGAACACATAAACTCGACTCATCTCGATAAAAAGTTCGCCTGTGCGAAATGCAACAAAGAATTCTCGCAAAAAGGATACTTAATAAAACATATGAATGCGATTCACCTAAATTTGAAGCCATTCATTTGTACGACGTGCAGCCGCCGTTTTACAACAAAACCAAAATTAACAAGGCATCTTAACATTATCCACCTGAAATTGAAGCCATTCTTGTGCGATAAATGCGATAGCAAATTCTCAACAAAAACAGGTTTAACGAGTCATAACAACGCAAGCCATTTCAATATAAGGTTTATTTGTGCCGATTGCAACCGCGAATTCACTAAGAAGATAACCTTAGCGGAACATATTGTTGCCGTTCACAGAAAACTGACGCCTTATGTCTGCGCGAAATGCGGACGTGCATTTGGCTATAGACATCATCTTTGGAGACACAAGACTTATGAAAAATGTGAATGA
- Protein Sequence
- MEQLGTIKVEIVKVEEEPSNSDAGDAIFDFKEEAIRSIKPERSNSAEKAVEEGAEKDTVMKETKALATPKGKKFICSDCNHGFHTRYNLNNHVDAVHKKLKRHACEECDKAFTQTGHLRAHVQTVHRQQRFACRECDKAFSSRSNLKAHANFVHRQLNTVTCGLCQKAFPNQRAFNSHVDGVHRRLREFQCEQCAQAFFKQDALSRHVDAVHRKLKQFVCNTCGRNFGWRANLLEHINSTHLDKKFACAKCNKEFSQKGYLIKHMNAIHLNLKPFICTTCSRRFTTKPKLTRHLNIIHLKLKPFLCDKCDSKFSTKTGLTSHNNASHFNIRFICADCNREFTKKITLAEHIVAVHRKLTPYVCAKCGRAFGYRHHLWRHKTYEKCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01008732;
- 90% Identity
- -
- 80% Identity
- -