Maru022348.1
Basic Information
- Insect
- Micropterix aruncella
- Gene Symbol
- -
- Assembly
- GCA_944547385.1
- Location
- CALYMV010004056.1:60892-62211[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.5e-07 4.5e-05 24.8 2.4 1 23 47 69 47 69 0.98 2 13 1e-05 0.00062 21.2 2.5 1 23 75 97 75 97 0.98 3 13 0.016 0.98 11.1 0.6 2 23 104 125 103 125 0.97 4 13 0.00029 0.018 16.6 1.7 2 20 130 148 130 151 0.93 5 13 0.00013 0.0076 17.8 3.2 1 23 157 179 157 179 0.97 6 13 0.00067 0.04 15.5 0.3 1 23 185 207 185 207 0.96 7 13 0.94 57 5.6 0.1 1 23 240 262 240 262 0.93 8 13 5.9e-06 0.00036 22.0 1.6 1 23 268 290 268 290 0.97 9 13 0.039 2.4 10.0 0.2 2 20 295 313 294 315 0.93 10 13 0.0043 0.26 13.0 4.8 1 23 320 342 320 342 0.97 11 13 7e-05 0.0042 18.6 0.6 1 23 348 370 348 370 0.98 12 13 2.9e-05 0.0018 19.8 7.5 1 23 376 398 376 398 0.97 13 13 2.2e-07 1.3e-05 26.4 2.2 1 23 404 427 404 427 0.97
Sequence Information
- Coding Sequence
- ATGGACCAAAATAACTTGTTGAAGTCAAGAGATGTTTTGTCAGAATCAAGAGATGTTTTGTCGGAATCGAAGGACGTTTTGCCTGAGGTTGAAAAAGTGGAGAATAAAAACGGTGCTAAGAATGTTGTAGATCGACGCTTTCAGTGCGATAAATGTGGAAAGTCATACAAAAGAAAAGCGCATTTACAAATGCATTTAGATGTTCACGCAGGGAATCGCAGTCACAAATGTGTGATCTGCGATCGGTCATTTTTCACCCGAAGTTATCTCCTCGAACATATCAACACGCATCTCGGATACAAAGGTTTAAAATGCGACGCGTGCAGAAAGTCGTTTCTGTCGCGACGGATGCTGATCGAGCACTTGAGGATCCACTCGGACAGCGCTAAGTGCCACTACTGCAATGCCGTCTTTCCAACGAAGAAGAAATTGAACCGCCATCTCCCGGTACACGAAGGCATCCGCCCGTACCACTGCGAGATATGTAAACGTTCGTTTTACAGTAAAAACAACCTTCTCGATCATCTGAGCAATCATAAGGATACCGACGGATTCATCTGCAACATTTGCAGTGCAGTTTTTTTCGTGAAGGATCAGCTGAAGACGCATTTGAGCGAACACAGAAAGATCAAAACGCTCAAATGCTCCAGTTGCAGCGACACGTTCCTGACGAAGATGAGCTTTCGAGCGCACGTCGAAGCGCACGACGTATCGCACCACGTCTGCAACGTCTGCGATAACATTTACCCGAGCGAAGATATACTGTCGCAGCACCTCGAGCTGCACACGTTCATAGAAACCTTCGACTGTGATGAATGTAACAAAGTCTTCactagtaaaagctacttagaCCTGCATAAGAAGACGCACAACACTCCAGTCAAGTGTTTTAAATGTAGGATCGATTTCCCGAGCAGATCAGAATTCGAGGCCCACCGCCTCAACTGTCGACGGAAATATCGTTGCAATCTCTGCGACAAATTTTTCCACAGCTATTCGTATCGGAAGAAACACATCGAAGGCCACTATGGCTTCAAGCCGTACGAATGTCCGATATGCGACAAACGATTTCtcaataaatattatgtaaaaatcCATCAAAACATCCACTTGGGACTGAAGAAGCACAAATGTAAACATTGTGAAAAATCGTTCCGCGACCAATCGACGCTCAACAAACACTCAAAGCTGCACAAGAATCTCAGGGAACACAAGTGTCCGAAATGTCCGATACGCTTCACGACAAACTCCAACTTGGAACGACATCTCAAAAAGGTTCACAAGATTACAGAAAAGCCACACATTGATATTAgactttaa
- Protein Sequence
- MDQNNLLKSRDVLSESRDVLSESKDVLPEVEKVENKNGAKNVVDRRFQCDKCGKSYKRKAHLQMHLDVHAGNRSHKCVICDRSFFTRSYLLEHINTHLGYKGLKCDACRKSFLSRRMLIEHLRIHSDSAKCHYCNAVFPTKKKLNRHLPVHEGIRPYHCEICKRSFYSKNNLLDHLSNHKDTDGFICNICSAVFFVKDQLKTHLSEHRKIKTLKCSSCSDTFLTKMSFRAHVEAHDVSHHVCNVCDNIYPSEDILSQHLELHTFIETFDCDECNKVFTSKSYLDLHKKTHNTPVKCFKCRIDFPSRSEFEAHRLNCRRKYRCNLCDKFFHSYSYRKKHIEGHYGFKPYECPICDKRFLNKYYVKIHQNIHLGLKKHKCKHCEKSFRDQSTLNKHSKLHKNLREHKCPKCPIRFTTNSNLERHLKKVHKITEKPHIDIRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01008716;
- 90% Identity
- iTF_01008716;
- 80% Identity
- -