Maru011742.1
Basic Information
- Insect
- Micropterix aruncella
- Gene Symbol
- pol
- Assembly
- GCA_944547385.1
- Location
- CALYMV010001817.1:28753-53131[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00018 0.011 17.3 0.5 2 23 34 55 33 55 0.97 2 14 0.00037 0.023 16.3 4.6 1 23 61 83 61 83 0.96 3 14 0.00093 0.056 15.1 0.1 1 23 88 110 88 110 0.98 4 14 2.1e-06 0.00013 23.4 0.4 2 23 117 138 116 138 0.96 5 14 4.3e-05 0.0026 19.2 0.5 2 23 144 165 143 165 0.96 6 14 0.00026 0.016 16.8 0.8 1 23 171 193 171 193 0.97 7 14 0.00015 0.0088 17.6 0.9 1 23 199 221 199 221 0.96 8 14 0.0094 0.57 11.9 7.4 3 23 239 259 238 260 0.96 9 14 0.00089 0.054 15.1 2.0 1 23 393 415 393 415 0.94 10 14 1.6 96 4.9 0.3 9 23 1166 1180 1164 1180 0.92 11 14 0.00019 0.011 17.3 0.0 1 23 1186 1208 1186 1208 0.96 12 14 0.061 3.7 9.3 8.1 1 23 1214 1238 1214 1238 0.98 13 14 8e-06 0.00048 21.6 5.2 1 23 1244 1266 1244 1266 0.97 14 14 5.4e-06 0.00033 22.1 0.7 2 23 1273 1294 1272 1294 0.95
Sequence Information
- Coding Sequence
- ATGAAGACGGCGAGAAGCGGAAAAGGGGGGAAAGACGACAGTAAGGATGAAGTAGAAGGAAACGTCCGTGATATAGACGCGGGACGCCTGAAACTGCTGCCTTGCCCCCTTTGCGCTAAGCAATTCACCAAAAACAGTCGCTTGGAGACTCACCTCCGGACGCATACCGGCCGGCGAGACTACCTTTGCACCCATTGCCACAAAACCTTCACCAAGAAAAGTGTTCTCGTTGAGCACATCAAGATCCACCAAGGCCAAAAGTATGAATGTGGATTTTGTGGAAAAGCTTTCATTCAGAAAGGTGTCTATGTGGCACATCTCAAGCTACACACAGGTAAGGATCTGTGGCCGTGCGAATATTGCGGAAAGAAATTCAACCGCAAGTCTTCGCTGGTGTCGCACGTGCGTCTCCATACGGGCGACTGCCTCCGCTGCACTCTCTGTCAGAAAACCTTCGTCTCCGCCAGCAAGCTGCTCTCACACATACGAGCGCACTCCGGTAGGAAAGAGTTCAAGTGTGACATTTGCGACCGGAGCTACATAGAGAAAAATTCCTTGCGGCAGCATTACATACTGCACACTCATGGAAAGACCTTCAAATGCCTTATCTGCGATAAAAGTTTTGGAAAGAAAGTGACTCTTCAGAAGCATGAATTATTGCACGGAGATACGAAGAGACCTCCGAATCCAACGAAGTCGACGCCGGATCTTCTCTGCCACCGGTGCGGTTGCATTTATCGGAGGCGATCTTCTCTGGTGAAGCATCTGCAGACTCATCATCGACTCGGCGATGGAAAACTATCATACGAAGAAAACGCGAAAAATATATCATCACCTTTACCTTCCGTCGAAGAAGTAGAGTCCGAATCTGGCGGTGAAATGCCTTCGACGTGCGATTCGCCTCTGAAAATTGAAGTGGAGCCAGACGCGATTGCGTCCTTTGCTGAGCTATCAAATTCTTCAGAATTGGAGAACATATTTGGAAATCTGAACGGCATCAGCCTAAACATGCTCGGAAAGCCACCTTCGGTGGAAGAAATTCGCTCCCTGGCTCTTTCGAATGTGCTTTCTCAATCTGCCTTTATTCCTGAACCAATCATCCCTGCTCATACCAGTGCGAGAAATGGCATTTCGATTACTCCAAAAAAAGAAGATGGTGAACACATAAACGGGCTCTATGCATGCGACGACTGCGATATGACTTTCTGTGATAAGCGGGCACTGACTACGCACTTTACACTACACTCTGTCGCTAATCGGTTTACATGCACTCAATGCTCaaagCCCACAAGATACAGAAACAAGCAAATCTCTCTACTTGACTTGATCTTATGCAACGACCAAGGCCTTATTACAGATGTCAAATACATGTCACATATTGGAAAAAGCGACCATATTGCGATTATGGCCAACCTGCAAGCTGAGACTAACTTTGCTATACCAGTAGAAAGCAGAGAGCCGAGACGATGTTTTTGGAAAGCAAATTTTGAATTCATCAGAAAATCTCTTGAGTTGGAGGAGCATCTAATTGATCTTAGCCATCCTTCACATCCTAACATCGGCACTAATGACAACTGGGAAAACCTCAAAATGGCAGTAAAAAGCACTCTGGATAAATACACACCAccatcattaaataaaaaacgccCCAAGGAAATTAACAAACCCTGGATTAGCAGAGATATCCATAATTTATCAAGAGAAAAAAGGAAACTTTgggatatttacaaaaataaaaaagatgatTCTTCTTACCGGCAATATCGAATAATTAACAACCGACTTGTCTCAGAAATCAGAAGATCCAGAGAAAACTTCGAAAGAAACCTCGTCAACAATGGAGCTAAATCATTCTATGGATATATCAAGATGCAACTTCAATCCAAAGCTTCTACTCCACTAGAACTCTACAACAGCACAACTGACTCCAACACAAGCAACCCTCTTGATATTGCGGAAATTTTTGCTAAGCAGTTTAATAATGCCTACGTTTACGAACCTGATGGACCTTTACCACCTCTAACTAACCTGACCAGGGTTAACAATTGTTTTGATGATGTTCATATTAGTACAGATTTAGTggaaaaaaccttaaaaatgcTAAACGTCGAATCCGCCATGGGTCCAGACAACTTACCGGCTTTACTCTGGAGGGAATGTGCAAGTCAGTTGAGTAAACCGCTAGCTGTAATTATGCAGCAATCAATCACATCAGGGAAATTACCTGCAGACTGGAAACACGCAATTGTAACCCCCATCTATAAAAAAGGAGATAAGCGCACTGCTTCCAATTACCGTCCCATCAGCTTAACTTGCATTGCTTGCAAATCCATGGAAAGAATCATTGCAGCAAAATTACGCGAATTTATATCGCAAAACAAAATTGTCCCAAATGAACAGCATGGTTTCATTCCAGGGCGCTCCACTGTCACCAACTTACTTCTTTGTCTCAACCGCTGGACTGAGAACTGGGATGGGGGTATACCGACAGATGTTATATATCTCGACTTCGAAAAGGCCTTCGACAGAGTTCCTGTAAGAAGACTTTTGCAAAAACTTGAACATCTCGGAATTCGAGGAAAAATTTTAAGTTGGATATCAGACTTCTTAACTGGTCGCACCTTCCAAGTGAAAGTAGGCGACTTTAAATCTGAACatttcactgtatccagtggtgtaccccaagggtcagtgctgggtccggttttgttcaccttgtatattacggatcttcaagcctcaatcacatcgcagagcagctactttgccgatgacacaaaattcttcgccaatcctattctatgcagtggacagcttcagcaagatcttgacaagatcaaagcgtggacggaagattggttttttaccttaaacgttgagaaatgtgtagtgcttcatatcgggaaaagcaaccccaacaaacaatattttctggcaaacgcccaactagaagcagtctggcaacaaaaagatcttggaataacaattactgatgatctcaaatgggagaaacacataattgcaattgctaaaagagccaactctattctctatctaataaggaaggctttccaacatctatcaatagaggtttttatcaagatctacaaggcatatgtgagacctattcttgagtatggctatcagatctggaacccttacttttgcaaagatgtagatatcctggaaaaggtacagcgaagagcaaccaaaatgccagtgggcctgaaaaataggaattatgaagatcgcttgaaattacttggaattactacactcaaacaaagaagacaaagaggggacctgattgagacatataaaattctaacacattattacgatgtacctgcactgaagaatatttacaaattcaacgtcaatacaaatcttcgaggtcacaacaaaaaactcaaccgtacaaaatttaaatctaatcctcttaagaacgttttgccaaatagagtggtggacatgtggaataaactaccatttgaaGTGTTTGATTCAGCGACTAAATTAAAATCGCACTTGCGTCGCCACAAGCAAGAACGGAATTTCCCGTGCTGGATCTGCGACAAAGAATTTCGCAACCGGGCGTCTCTGCTCAGCCACGCTGCCATTCACACCGGCACACGACCGTTCCGTTGCCCTCACCGAGGCTGCCATAAAACATTCATGAAGAAAGTGTGTTTGAAACGGCATGAGATGAGTCACAGCGGTATTCGGCCTCATCCCTGTCCGCACTGCCCCAAGAGgtttgCTCAGAAAAACCATTTAGAGAATCATTTGAAGACACACTCAGGGGAAAAACCTTTCCTTTGCGCATTCTGCGGGAAAAGCTTCAGCAGaagTGATGTGTTGACATCCCACATCCGCACGCACACCCTCAAACATTTACTTAAGGACGACTCCTTCCAAGCGCATTCACACTGGCCTTGA
- Protein Sequence
- MKTARSGKGGKDDSKDEVEGNVRDIDAGRLKLLPCPLCAKQFTKNSRLETHLRTHTGRRDYLCTHCHKTFTKKSVLVEHIKIHQGQKYECGFCGKAFIQKGVYVAHLKLHTGKDLWPCEYCGKKFNRKSSLVSHVRLHTGDCLRCTLCQKTFVSASKLLSHIRAHSGRKEFKCDICDRSYIEKNSLRQHYILHTHGKTFKCLICDKSFGKKVTLQKHELLHGDTKRPPNPTKSTPDLLCHRCGCIYRRRSSLVKHLQTHHRLGDGKLSYEENAKNISSPLPSVEEVESESGGEMPSTCDSPLKIEVEPDAIASFAELSNSSELENIFGNLNGISLNMLGKPPSVEEIRSLALSNVLSQSAFIPEPIIPAHTSARNGISITPKKEDGEHINGLYACDDCDMTFCDKRALTTHFTLHSVANRFTCTQCSKPTRYRNKQISLLDLILCNDQGLITDVKYMSHIGKSDHIAIMANLQAETNFAIPVESREPRRCFWKANFEFIRKSLELEEHLIDLSHPSHPNIGTNDNWENLKMAVKSTLDKYTPPSLNKKRPKEINKPWISRDIHNLSREKRKLWDIYKNKKDDSSYRQYRIINNRLVSEIRRSRENFERNLVNNGAKSFYGYIKMQLQSKASTPLELYNSTTDSNTSNPLDIAEIFAKQFNNAYVYEPDGPLPPLTNLTRVNNCFDDVHISTDLVEKTLKMLNVESAMGPDNLPALLWRECASQLSKPLAVIMQQSITSGKLPADWKHAIVTPIYKKGDKRTASNYRPISLTCIACKSMERIIAAKLREFISQNKIVPNEQHGFIPGRSTVTNLLLCLNRWTENWDGGIPTDVIYLDFEKAFDRVPVRRLLQKLEHLGIRGKILSWISDFLTGRTFQVKVGDFKSEHFTVSSGVPQGSVLGPVLFTLYITDLQASITSQSSYFADDTKFFANPILCSGQLQQDLDKIKAWTEDWFFTLNVEKCVVLHIGKSNPNKQYFLANAQLEAVWQQKDLGITITDDLKWEKHIIAIAKRANSILYLIRKAFQHLSIEVFIKIYKAYVRPILEYGYQIWNPYFCKDVDILEKVQRRATKMPVGLKNRNYEDRLKLLGITTLKQRRQRGDLIETYKILTHYYDVPALKNIYKFNVNTNLRGHNKKLNRTKFKSNPLKNVLPNRVVDMWNKLPFEVFDSATKLKSHLRRHKQERNFPCWICDKEFRNRASLLSHAAIHTGTRPFRCPHRGCHKTFMKKVCLKRHEMSHSGIRPHPCPHCPKRFAQKNHLENHLKTHSGEKPFLCAFCGKSFSRSDVLTSHIRTHTLKHLLKDDSFQAHSHWP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -