Maru002540.1
Basic Information
- Insect
- Micropterix aruncella
- Gene Symbol
- -
- Assembly
- GCA_944547385.1
- Location
- CALYMV010000372.1:116913-121186[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.095 5.7 8.7 0.1 1 17 160 176 160 177 0.88 2 13 0.00021 0.013 17.1 0.4 1 23 189 212 189 212 0.95 3 13 1e-05 0.00062 21.2 2.1 1 23 218 241 218 241 0.95 4 13 0.0059 0.36 12.5 1.0 5 21 244 260 243 263 0.87 5 13 9.5e-05 0.0058 18.2 1.6 1 23 269 292 269 292 0.92 6 13 1.5e-05 0.00092 20.7 1.4 1 23 298 321 298 321 0.92 7 13 4.8e-05 0.0029 19.1 1.5 1 23 327 350 327 350 0.92 8 13 6.7e-05 0.0041 18.6 2.5 1 21 356 376 356 379 0.90 9 13 9.5e-05 0.0058 18.2 1.6 1 23 385 408 385 408 0.92 10 13 1.5e-05 0.00092 20.7 1.4 1 23 414 437 414 437 0.92 11 13 0.0095 0.58 11.9 0.5 5 23 447 466 446 466 0.89 12 13 1.5e-05 0.00088 20.7 1.5 1 22 472 493 472 495 0.91 13 13 1.3e-05 0.00078 20.9 4.6 1 23 501 524 501 524 0.97
Sequence Information
- Coding Sequence
- ATGGAGGATGTTTTCAAGCTTTTTAACTGGGACGGATTCGGCAACAACATCAATGGCAAATACATCACTCACCTCCGATTCGCTGATGATATGGTCACCATGGCTGAATCGATGGACGACCTTGGCACAATGCTCAGAGACCTCAATACCGTCCTCCAACAGGTGGATCTAAAAATGAATGTGGTTACTGGTcactttttcataaaaaatatgagcGTAAACGAGAAAATTGTGGACGATTACAACGACGTCAGAGTAAAAAAAGAGGAAAATGATTTCATTGAAACGGACGTCTTTGATTCTGACAATTCAGATTCGAATATTCCGTTGAGCGATTTCATACCAGATAAACAAGGCAACGTGATCGAATTCTTCGAAGGAGACACTGCTTTCATAAAGCCAGAGCCAGTCGAAGGTGGAACATCAGGAACCAGTAATATTGGCGATAGTGGATCGAGTGTTGGAAGAGTCAAATCACATGTTTGTCCGGAGTGCAACAGGGATTTTCCTTATAAGAGTGTTTTAAATCAGGACATTACTGGCATTCCTTTGAAATTAAAGACTTTTGTTTGTGGAAAATGCGATCGCTCTTTTACTTGGCAAGGTAGTTTAAAGAAGCATCTGGACTCGGTTCATAAGAAGCTGAAGAAGTACTTATGCGAAGAATGCGATCACACTTTTACACAGCAACGTAGTTTAAAGAGGCATTTAGACACAGTTCATAATGAAgaatgcgatcattcttttaGTCAGCATGGAAACTTGAAGAGACATTTCGACGCAGTTCATAAGAAGCTAAAAAAGTACTCATGTGAAGAATGCGATCATTCTTATAGTCAGCATGGAGACTTGAAGAAACATTTGGACGCAGTTCATAAGAAGCTGAAGAAGTACTCATGTGAAgaatgcgatcattcttttaGTCGGCATGGAAACTTGAAGATACATTTGGACGCAGTTCATAAGAAGCTGAAGAAGTACTCATGTGAAGTATGCGATCATTCTTTTAGTCGGCATGGAGACTTGAAGACACATTTGGACGCAGTACATAAGAAGCTGAAGAAGTACTCATGTGAAgaatgcgatcattcttttaGTCGGCATGGAGACTTGAAGAGACATTTCGACGCAGTTCATAAGAAGCTAAAAAAGTACTCATGTGAAGAATGCGATCATTCTTATAGTCAGCATGGAGACTTGAAGAAACATTTGGACGCAGTTCATAAGAAGCTGAAGAAGTACTCATGTGAAgaatgcgatcattcttttaGTCGGCATGGAAACTTGAAGATACATTTGGACGCAGTTCATAAGAAGCTGAAGAAGTACTCATATGAAGTATGCGATCATTCTTTTAGTCGGCATGGAGACTTGAAGACACATTTGGACGCAGTACATAAGAAGCTGAAGAAGTACTCATGTGAAgaatgcgatcattcttttaGTCGGCATGGAGACTTGAAGAGACATTTGGGTGCAGTTCATAAGAAGCTGAAGAAGTACTCATGTGaacaatgcgatcattcttttaCTCAGCATACAAACTTAAAGAGACATTTAGAGACAGTTCATAGGAAGCTCAAACTTCAAAGAAGTACTCGTGAGAAGAATGCGATCACACTTTTACTCGGCAAGGTagtttaa
- Protein Sequence
- MEDVFKLFNWDGFGNNINGKYITHLRFADDMVTMAESMDDLGTMLRDLNTVLQQVDLKMNVVTGHFFIKNMSVNEKIVDDYNDVRVKKEENDFIETDVFDSDNSDSNIPLSDFIPDKQGNVIEFFEGDTAFIKPEPVEGGTSGTSNIGDSGSSVGRVKSHVCPECNRDFPYKSVLNQDITGIPLKLKTFVCGKCDRSFTWQGSLKKHLDSVHKKLKKYLCEECDHTFTQQRSLKRHLDTVHNEECDHSFSQHGNLKRHFDAVHKKLKKYSCEECDHSYSQHGDLKKHLDAVHKKLKKYSCEECDHSFSRHGNLKIHLDAVHKKLKKYSCEVCDHSFSRHGDLKTHLDAVHKKLKKYSCEECDHSFSRHGDLKRHFDAVHKKLKKYSCEECDHSYSQHGDLKKHLDAVHKKLKKYSCEECDHSFSRHGNLKIHLDAVHKKLKKYSYEVCDHSFSRHGDLKTHLDAVHKKLKKYSCEECDHSFSRHGDLKRHLGAVHKKLKKYSCEQCDHSFTQHTNLKRHLETVHRKLKLQRSTREKNAITLLLGKVV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01007630;
- 90% Identity
- iTF_01007600;
- 80% Identity
- iTF_01007600;