Maru030431.1
Basic Information
- Insect
- Micropterix aruncella
- Gene Symbol
- -
- Assembly
- GCA_944547385.1
- Location
- CALYMV010006818.1:9330-10472[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.4e-05 0.00082 20.8 0.7 1 23 89 112 89 112 0.93 2 10 1.2e-05 0.00072 21.0 0.2 1 23 118 141 118 141 0.92 3 10 1.2e-05 0.00074 21.0 0.4 1 23 147 170 147 170 0.97 4 10 6.5e-05 0.0039 18.7 1.1 1 23 176 199 176 199 0.96 5 10 1.6e-05 0.00097 20.6 0.5 1 23 205 228 205 228 0.97 6 10 6.6e-05 0.004 18.7 0.2 1 23 234 257 234 257 0.96 7 10 2.6e-05 0.0016 19.9 0.3 1 23 263 286 263 286 0.97 8 10 1.8e-06 0.00011 23.6 0.4 1 23 292 315 292 315 0.97 9 10 2.8e-05 0.0017 19.8 0.9 2 23 322 344 321 344 0.92 10 10 0.00052 0.031 15.9 0.0 1 21 349 369 349 372 0.90
Sequence Information
- Coding Sequence
- ATGAGTGAGAAAATTGTGGACGATAACAGCACCACGACAGAGAAGATTGAAGAAAACGTCGCCATTAAATCGGAGGTCTTCGATCCTGATGATTCAGATTCGAGCGTTCCTTTGAGCGATTCGATATCGGATGAAAGAGGTAATGTGGTCGAATTCTTCGAAGAAGAGGCTCAAGTCATTAAGTTAGAACCAATCGAAAGTGGAGGACCACATGGAAGCGGTAGTATTAGTGATAGTAGATCTTGTGTTGGAATAGTTAAATCTTTTGTTTGTCCAGAGTGCGACAGGGCGTTTTCGCTGAAGTGTAATTTGAAGTCTCATATTACCGCCGTTCACGtgaaattaaaggaatttgtgTGCGGCGAATGTGACAGTTCATTTTCACGGAAGGGAAATTTGAACAAACACGTTACTGCAGTTCACTTGAAGTTGGATAAATTTGTATGTGGTGAGTGCGATCATGCTTTTACATATCGAGGCGGTTTGAAGAGACACATTGACACAGTTCATagaaaaatgaagaaatttgtatGTAACGAATGTGATAGTGCATTTTCAGAGAAAAGCAAACTAAGGAGACATTTCAACTCACTTCACACAAATCTGAAGAGATTTTCATGCGGAGAATGTTATCGTGCTTTTacagagaaaggaaatttaaagaAGCACTTAGACACTGTCCATAGAGAATCGAAAAAATTCATTTGTGGCGAATGTAATCGTGCATTTTCAGAGCAAAACAGTTTAAAGGACCACTTAGACACAGTTCACAGAAAACTGAAGATATTTTCATGCGGGGAATGCCTTCGCGCTTTCacagagaaaggaaatttaaagaAGCACTTGGAAACTGTGCATCAGCaattgaagaaatttgtttGCGTTGAATGTGATCGTGCGTTTTCACAGCGAGGACATTTAAAGGCGCATTTGGACACAGTTCACAGAAAGCTAAAGACATTGTCATGCGCGGAATGCAATCGTAATTTCACTCATCGAGGAAACCTGAAAACGCACATGGATGCCATTCATAAGAAAATTACGTACGCGTGTGGGGAATGTGGTGTTGCATTTTCTTCAAAGTACTTATTGAAAGGGCATTTAGGTGATGTTCATAGGGAATTTAAAGTTGTTTATGCGTAG
- Protein Sequence
- MSEKIVDDNSTTTEKIEENVAIKSEVFDPDDSDSSVPLSDSISDERGNVVEFFEEEAQVIKLEPIESGGPHGSGSISDSRSCVGIVKSFVCPECDRAFSLKCNLKSHITAVHVKLKEFVCGECDSSFSRKGNLNKHVTAVHLKLDKFVCGECDHAFTYRGGLKRHIDTVHRKMKKFVCNECDSAFSEKSKLRRHFNSLHTNLKRFSCGECYRAFTEKGNLKKHLDTVHRESKKFICGECNRAFSEQNSLKDHLDTVHRKLKIFSCGECLRAFTEKGNLKKHLETVHQQLKKFVCVECDRAFSQRGHLKAHLDTVHRKLKTLSCAECNRNFTHRGNLKTHMDAIHKKITYACGECGVAFSSKYLLKGHLGDVHREFKVVYA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -