Maru027246.1
Basic Information
- Insect
- Micropterix aruncella
- Gene Symbol
- -
- Assembly
- GCA_944547385.1
- Location
- CALYMV010005546.1:5214-6602[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00037 0.022 16.3 1.1 1 23 86 109 86 109 0.94 2 13 2.4e-05 0.0015 20.1 4.8 1 21 115 135 115 138 0.95 3 13 0.0088 0.54 12.0 0.0 3 23 144 165 142 165 0.93 4 13 0.00031 0.019 16.5 2.4 1 23 170 193 170 193 0.89 5 13 6.3e-05 0.0038 18.7 0.1 1 23 199 222 199 222 0.92 6 13 0.0045 0.27 12.9 0.6 1 23 228 251 228 251 0.97 7 13 0.0004 0.024 16.2 0.8 1 23 257 280 257 280 0.94 8 13 2.4e-05 0.0015 20.0 2.4 1 23 286 309 286 309 0.98 9 13 0.018 1.1 11.0 0.9 1 23 315 338 315 338 0.89 10 13 9e-06 0.00054 21.4 1.5 1 23 343 366 343 366 0.93 11 13 8.3e-05 0.005 18.4 0.2 1 23 372 395 372 395 0.94 12 13 2e-05 0.0012 20.3 0.4 1 20 403 422 403 423 0.96 13 13 7.8e-05 0.0047 18.4 0.3 1 20 432 451 432 453 0.96
Sequence Information
- Coding Sequence
- ATGAATTCCCAAATTGTCGAAGTCTACAACGTTGCATCTGTGAAAATAGAAGATAACATCCCCGTTAAAGCGGAGATCATCGATTCTGAAATCGATTTACAAGCAGATGAGAGAGGGAATATCGTCCAATTTTTCGAAGGCGAAACACGATTTATAAAACAGGAAGAATCGGGATTTTATCGCTCGGAGGACGACGCGAGAAGCTGCAGACGCAAGCGGGCGATCATAAACTATAGCGGTGGAAAGATCAAATCGTTCCCATGCACGAAATGTGACAAAGTGTTCTCCGGAGAGAGATGTTTGAACACGCACGTCGATTCAATTCACCGGGAAGCTAAGAGCTATTCTTGTAAGGAGTGTCGACGTGCTTTCACGCGTTGGCACAATTTGAAACGACATTTACAATGCATTCATAGCGTTGTATTATTCTGCGACGAGTGCCATCGCGCATATAAAGGAGCACCAGCGCTGGAAGCACATTTGAATGCTGTACATCGAAATATCAAATTTTCGTGCGATGAGTGTGATCGGAAATTTGCACGGAAAGGGTATTTAAAAGTGCATTGTAATTCAGTGCATAGAAAACAGAAGGAGTTTTCGTGTTGGGAATGTGGTCGAGCATTCGCTTCGAAGCagtacttacaattacacatagatggcattcatagaaaattaaaaaatcatcgcTGTAGAGAGTGTGACGGTGCATTCTGGCAGCGAAGCGCTTTAACAAATCATATAAAGAGTGTTCATAGAAAAATTAGGAATTTCGCGTGTGGCGATTGCAAACGGGAATTTGCGACGTCACAGCATCTAAACTTGCATACAGATTCCGTGCATCGCAAGCTTAAAAACTTCGTCTGCAGCGAATGTAACCGCCAATATTCAACGCGACAACACTTAAACCTGCACATAAATACGCTTCATCGTAGAATCAAGAAATTCAACTGCCTCGTATGCAATCGCGCGTTCTCAAGGATGCAGCACGTAAAGATGCACACGGACGCCGTGCATCACAATATAAAGCACGTCTGTTCCGAGTGCGGTCGTGGCTTTAGTCGTCGAGAGCACCTGAAGGCTCACTTCGAAGTCGTACAcgaaaaaatcaagaaattcGCGTGCGCTACGTGCGGTCGGGCTTTCGCTCAAAAGGGGCACCTGAAAGGGCACTTAAACGCACTCCACGGCAATTCAAACCCAGCGGATTTTGTCTGCGGGCAATGTGACCTTCGCTTCACGCAGAAATCCAACCTAAAGACGCATCTCGACTGCATCCATGGCAAAATTAAGAAGTTTACCTGCAGCAGGTGTGAGCGACCATTTGCGCGGAAAGCGGATTTGAAAAAACACATAGATTATTGCTCAAAGTTTGAAGTGTTAAATGAATGA
- Protein Sequence
- MNSQIVEVYNVASVKIEDNIPVKAEIIDSEIDLQADERGNIVQFFEGETRFIKQEESGFYRSEDDARSCRRKRAIINYSGGKIKSFPCTKCDKVFSGERCLNTHVDSIHREAKSYSCKECRRAFTRWHNLKRHLQCIHSVVLFCDECHRAYKGAPALEAHLNAVHRNIKFSCDECDRKFARKGYLKVHCNSVHRKQKEFSCWECGRAFASKQYLQLHIDGIHRKLKNHRCRECDGAFWQRSALTNHIKSVHRKIRNFACGDCKREFATSQHLNLHTDSVHRKLKNFVCSECNRQYSTRQHLNLHINTLHRRIKKFNCLVCNRAFSRMQHVKMHTDAVHHNIKHVCSECGRGFSRREHLKAHFEVVHEKIKKFACATCGRAFAQKGHLKGHLNALHGNSNPADFVCGQCDLRFTQKSNLKTHLDCIHGKIKKFTCSRCERPFARKADLKKHIDYCSKFEVLNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -