Maru025386.1
Basic Information
- Insect
- Micropterix aruncella
- Gene Symbol
- -
- Assembly
- GCA_944547385.1
- Location
- CALYMV010004930.1:5232-19155[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.005 0.3 12.8 0.4 2 23 87 109 87 109 0.95 2 27 0.0039 0.23 13.1 5.4 1 23 115 138 115 138 0.96 3 27 0.037 2.3 10.0 3.7 1 23 144 167 144 167 0.96 4 27 0.0025 0.15 13.7 3.8 1 23 174 197 174 197 0.93 5 27 0.00017 0.01 17.4 1.2 1 23 202 225 202 225 0.94 6 27 0.16 9.8 8.0 0.6 1 16 260 275 260 277 0.84 7 27 0.00023 0.014 17.0 2.5 1 23 381 404 381 404 0.97 8 27 3.4 2.1e+02 3.8 3.3 1 23 410 433 410 433 0.94 9 27 0.0085 0.52 12.0 2.0 1 23 440 463 440 463 0.95 10 27 0.00026 0.016 16.8 1.2 1 23 468 491 468 491 0.93 11 27 7.2 4.4e+02 2.8 1.5 1 23 497 520 497 520 0.95 12 27 0.00049 0.03 15.9 0.9 1 23 526 549 526 549 0.90 13 27 0.00029 0.018 16.7 3.4 1 23 556 579 556 579 0.97 14 27 0.12 7.4 8.4 0.1 1 23 590 613 590 613 0.96 15 27 0.0024 0.15 13.7 0.4 3 23 621 642 620 642 0.96 16 27 1.6 95 4.9 0.2 1 19 648 666 648 668 0.95 17 27 0.00059 0.036 15.7 1.9 2 23 744 766 744 766 0.95 18 27 0.016 0.94 11.2 6.5 1 21 772 792 772 795 0.96 19 27 0.014 0.82 11.4 4.7 1 23 801 824 801 824 0.96 20 27 0.017 1 11.1 2.3 1 23 831 854 831 854 0.92 21 27 0.00018 0.011 17.3 1.2 1 23 859 882 859 882 0.91 22 27 4.9 2.9e+02 3.4 0.1 5 23 892 911 890 911 0.87 23 27 0.0023 0.14 13.8 1.2 1 23 917 940 917 940 0.91 24 27 0.00053 0.032 15.8 4.4 1 23 947 970 947 970 0.97 25 27 0.071 4.3 9.1 0.1 2 23 982 1004 981 1004 0.92 26 27 0.68 41 6.1 0.3 3 23 1012 1033 1011 1033 0.93 27 27 0.025 1.5 10.5 0.2 1 23 1039 1062 1039 1062 0.96
Sequence Information
- Coding Sequence
- ATGAAGAAGACTGACATCAACAAAAAAGAAATTGCTTTGAATTTCTACGATGAATTTACAGACATCGGAGATGTTGCCTATGTAAAGACAGAAGTCAAAGATAatgataaagaagaagaagtattaATACCGGAAATACTGTTACCAGAAATATTGAAGCTAAAAGTATCACAGTGTCCGATAGTGCTGATCGAACGTTTGGACGATGCGATATTTCGTCGATACTCGAAACCTAAAAATGCAAAGGACCGGAAGGCGGAGTGCGATGTTTGTCATAAAATATTGAGTtccaaagatgtattacagaaTCATATAAAAGCCGTTCACTTAAAGCTGAAAGCATTTAAATGCAAGCATTGCGGTCATAAATTTGGAAACGTGTATCAGATGCGATCGCACATCCGTTTCGTGCACAACAAAGAACGGCCGTTTGCATGCGATCACTGCGACAGGCGCTATGCCTGTCGTGAAAATTTAAGCGTTCATATTCGGTACAAGCACGAGGATTGCGACGAAAAGTACGAATGCGACATTTGCTTGAAAACGTTCAAGCACAAACTAAAGTTACGTCGGCACGAATATTCTCAGCACAGAAACGTTACGTTCACCTGCGACTTTTGCGACAAAATGTTCACGAATAAGAACTCTTGGAAGAATCACGTCGAAAACGTTCACAGCGACTTTAAAAAATACGGTTGCATTCTTTGTCCGTACCAAGCGAACTATATAGAAAAATTGCAAAAACACATCTCGGCGATTCATCTCAAATTGAAACCGTACGATTGCAAAGTGTGCGGGAAGAAATTTGCGCTAAAATATTACATGACTAGTTATTTCTCAATTGGCATGGAGAAGGCTGGCAATAACAAATATGAAATTGTTTCGAATTTCTACGATGGATTTACAGACGTCGGAGATGTTGCCATCGTAAAGAAcgaaatcaaagaaaatgataaagaagaagaagtatcaAAGTATCCGATAGTGTTGATCGAACGTTTGGACGATGCGACATTGTGTCAATACTCGAAACCTAAAAATGCAAAGCGCCGCAAAATTCCCATCAAGGCAGAGTGCGATATTTGTCAGAAAATATTGGTACAGAAtcatataaaaacaattcatttaAAGCTTAAACCGTTCAAATGCACGCATTGCAGTCGCGAATTTGCAAACGTGTACCAACTGCGATCGCATGTTCGTAACGTGCACGACAATGATCGGCCGTTTGCGTGCGATCACTGCGACAGTCGCTTTGGCTGTCGCTACGGATTAAGCGTTCATATTCGGTTCCAGCACGAGGAATGCGATGGAAAATACGAATGCGTCGTTTGCTTAAAAACGTTCAAGAACAAAATGAGGCTGAATCAGCACCGTTATTCTCAACACAGAAACGTCTCGTTCACCTGCGACGTTTGCAGCAAAACGTTCAGGAGTAAGCGCTCTTGGAAGAATCACGTGGCATACATTCACGGCGAAGTTGAAAAACACAGTTGCGTTCTTTGTCCGTTTCAAACGAACAATATGAAACGTTTGCAAACGCATGTCTCGACGGTTCATTTCAAATTAAAACCGTACGATTGCAAAGCGTGCGGGAAGAAATTTGCGCAAAAAAGTAACATGACTTCGCATTTCGCTAACATGCATACGACTCTCTCTCGTACACATCAATGTGAGACGTGCGTTCGCGCGTTCAAGTATGCATTCCAATTAAAAAAGCACATGAACAAAATGCACTTTCATACTGTGCACAATTTCGATAAGAAGTATGTGTGCAACGTGTGCAACAGCGGCTTCACCGCGAAATCAGTGATGCTACAGCACATTCTGATCACACACTTAAACGTCAAGAACAACGCCTGTTCATTTTGCGATGTCGTCGTCACTAGCTACTCGTCGTTAAAGCGACACATCTTGAGGCGGCACATCAACCGCTGTTCCTACTCTTGTATGACATGCAACGTAGACTTCAGGACTGAGCAAGAATGGACAGTACACAGTTATATTGCAATCGGCATGGAGAAGACTGATAACATCAAAAATGAAGTAACTTTGAATTTCTATGATGAATTAATAGACATCGGAGGTGTTGCCGTCGTTAAGAAAGAAATCAAAGAAATTGATAACGAAGAAGAAGTATCAAAGTATCCGATAGTGCTGATCGAACGTTTGGACGATGCGATATTTCGTCGATACTCGAAACCTGAAAATGCAAAGCGCCGGAAGGCGGAGTGCGATATTTGTCATAAAATATTGTGTACCAAAAGTGCATTACAGAATCATATAAAAGCCGTTCACTTAAAGCTGAAAGCCTTTAAATGCAAGCATTGCGGTCATAAATTTGGAAACGAGTATCAGATGCAATCTCACATCCGTTGCGTGCACAACAAAGAACGGCCGTTCGCATGCGATCACTGCGACAGGCGCTTTACCTGTCGCGTAAATTTAAGCATTCATATTCGGTACAAGCACGAGGATTGCGACGAAGAGTACGAATGCGACATTTGCTTGAAAACGTTCAAGCACGAACTGAAGTTACGTCAGCACGGATATTCTCAGCACAGAAACGGTACGTTCACCTGCGACTTTTGCGGCAAAACGTTCACGAAAAAGAACTCTTGGAAGAATCACGTCGAAGACGTTCACGGCGACGTTAAAAAATACGGTTGCATCCTTTGTCCGTACGAAACgaactatataaaaaatttgCAAAAGCACATCTCGGCGATTCATCTTAAATTGAAACCGTACGATTGCAAAGTGTGCGGGAAGAAATTTGCGCTAAAGAACAACATGACACAACATTTCACTAACGTGCATACGACTCTGTCTCGTACACATCAATGTGAGATGTGCGTTCGTGCATTCAACCACGCATACCAATTAAAACGGCACAAGAACACAATGCACTTTCATACGGTGCACAATTTCGATAAGAAGTGGGTGTGCGACGTGTGCAACAGCGGCTTCGCCTCGAAAGCAGCGATGCGACAGCACATTCTGTTCACACACTTGAACATCAAGAACAACGCTTGTTCATTTTGCAATGTCGCCGTCCTTAACAAGACATCGTTAAAGCGACACATCCTGCGGTGGCACATCAACCGCTGTTCCTACTCTTGCATGGAATGCAATATGGACTTCACGACTGAGGATGAATGGTCACTACACAGGAAACTCGCACATTAA
- Protein Sequence
- MKKTDINKKEIALNFYDEFTDIGDVAYVKTEVKDNDKEEEVLIPEILLPEILKLKVSQCPIVLIERLDDAIFRRYSKPKNAKDRKAECDVCHKILSSKDVLQNHIKAVHLKLKAFKCKHCGHKFGNVYQMRSHIRFVHNKERPFACDHCDRRYACRENLSVHIRYKHEDCDEKYECDICLKTFKHKLKLRRHEYSQHRNVTFTCDFCDKMFTNKNSWKNHVENVHSDFKKYGCILCPYQANYIEKLQKHISAIHLKLKPYDCKVCGKKFALKYYMTSYFSIGMEKAGNNKYEIVSNFYDGFTDVGDVAIVKNEIKENDKEEEVSKYPIVLIERLDDATLCQYSKPKNAKRRKIPIKAECDICQKILVQNHIKTIHLKLKPFKCTHCSREFANVYQLRSHVRNVHDNDRPFACDHCDSRFGCRYGLSVHIRFQHEECDGKYECVVCLKTFKNKMRLNQHRYSQHRNVSFTCDVCSKTFRSKRSWKNHVAYIHGEVEKHSCVLCPFQTNNMKRLQTHVSTVHFKLKPYDCKACGKKFAQKSNMTSHFANMHTTLSRTHQCETCVRAFKYAFQLKKHMNKMHFHTVHNFDKKYVCNVCNSGFTAKSVMLQHILITHLNVKNNACSFCDVVVTSYSSLKRHILRRHINRCSYSCMTCNVDFRTEQEWTVHSYIAIGMEKTDNIKNEVTLNFYDELIDIGGVAVVKKEIKEIDNEEEVSKYPIVLIERLDDAIFRRYSKPENAKRRKAECDICHKILCTKSALQNHIKAVHLKLKAFKCKHCGHKFGNEYQMQSHIRCVHNKERPFACDHCDRRFTCRVNLSIHIRYKHEDCDEEYECDICLKTFKHELKLRQHGYSQHRNGTFTCDFCGKTFTKKNSWKNHVEDVHGDVKKYGCILCPYETNYIKNLQKHISAIHLKLKPYDCKVCGKKFALKNNMTQHFTNVHTTLSRTHQCEMCVRAFNHAYQLKRHKNTMHFHTVHNFDKKWVCDVCNSGFASKAAMRQHILFTHLNIKNNACSFCNVAVLNKTSLKRHILRWHINRCSYSCMECNMDFTTEDEWSLHRKLAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -