Maru038505.1
Basic Information
- Insect
- Micropterix aruncella
- Gene Symbol
- -
- Assembly
- GCA_944547385.1
- Location
- CALYMV010010724.1:55602-56849[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.2e-05 0.0031 19.0 0.5 3 23 48 69 46 69 0.93 2 13 0.0026 0.16 13.7 0.6 1 23 74 97 74 97 0.90 3 13 0.00014 0.0086 17.6 0.1 1 23 103 126 103 126 0.95 4 13 0.00024 0.015 16.9 0.1 1 23 133 156 133 156 0.94 5 13 0.0003 0.018 16.6 0.3 1 20 161 180 161 184 0.90 6 13 0.00014 0.0084 17.7 0.3 1 23 191 214 191 214 0.95 7 13 0.0017 0.1 14.3 6.4 2 23 221 243 220 243 0.91 8 13 0.00032 0.02 16.5 0.1 1 23 248 271 248 271 0.96 9 13 5.1e-05 0.0031 19.0 0.8 1 23 277 300 277 300 0.97 10 13 0.069 4.2 9.2 1.2 1 23 305 328 305 328 0.87 11 13 0.00017 0.01 17.4 0.5 1 23 334 357 334 357 0.91 12 13 1.2e-05 0.00075 21.0 0.3 2 23 363 385 362 385 0.92 13 13 3.5e-07 2.1e-05 25.8 0.2 1 23 391 414 391 414 0.98
Sequence Information
- Coding Sequence
- ATGGATAACAAAATCGCGCAAATCGACCCGAATATTGCTGTAAAATCAGAGGACTTCTCTTCTGACGACGGAACGCACGTGAATGTAGAGTTCTTCGAAGGGGACACGAGCTTCCTGAAAGCGGATCCTCACAATGTCATCTGTCAGGAATGCGACAAAGTATTCGCGAATAGGAAAGCGTTTAGAAGGCATAGGACGTACGCGCATCGTCCGGCTAGGTATTTATGCGTGGAGTGTGGGCGGCGTTTCGTCGAGAGACACCTTCTGAAGCAGCATAACGAAGTCGTGCATTTGAAGATGAAGAATCACGAGTGTCCTGAATGCGAGCGATCGTATCCGTACAGAGGGTCGTTGCAAGCGCATTGGGAGAGCGTCCACGGCTTCGCCGTTAAGAGTTTCGTGTGCGCGGACTGCGGCGCCGCGTACAAGCAGAAGCGCACCCTGAAGTTACATATAGAAGCCGTGCACATGCATTTGAAGTACATCTGTGGGGTTTGCGAGAAGGATTTCCCGAGGAAAGACTCTTTGAAGGCGCACTTCGACGATAAGCACTGCGATGGGGGTAAAAGATACGCGTGCGAGCAGTGCGAGCAGACGTTCGGAAGACGCCGAAACTTGACGACGCACGTGCAGTGGGTACACAATAGATTAAATCGATTAACGTGTGACTCTTGCGACCGTTGTTTCAAGAGCAAATCTACCCTGGCGCGACACTACCACTTCAAACATGAACCGCGCAAGTTCATCTGCGACATATGCGGTGGATCCTACAGCATGAAAGCGAAACTTAAGATACACATGACATCAGAGCACTTCCGCTTAAAAGACTTCGTATGTGAGCAGTGCGGCGGCGCTTTCAAACACCGCGGCGCCTTAGTGAGACACCACCGCATAGTTCACATGACAAAAAACTTCGCTTGCACGGAGTGTGACTACGCATTCGCTACAAAATGCATTCTGAAGCTACACTTCGATTCGGTTCACCTCAAGATCAAAAAATACCAATGCTCCGAGTGTAACGCTTCATATTCGCGCAACCAAAAGCTGAAACAGCACGTGGATGCGATGCATCGCCAGCTGAAATTGGTCTGTGAGCACTGCGAGCGTACCTTCACGAGACCCGATTACTTGAAGATCCATCTAGAAGCTGTACAttacaaattgaaaaaatacaaatgtccTGAATGCGGAAAGGCGTTCGCGAGGAGTCAGCAGATGAACATACACGCCAGAACAATGCATAAGTGA
- Protein Sequence
- MDNKIAQIDPNIAVKSEDFSSDDGTHVNVEFFEGDTSFLKADPHNVICQECDKVFANRKAFRRHRTYAHRPARYLCVECGRRFVERHLLKQHNEVVHLKMKNHECPECERSYPYRGSLQAHWESVHGFAVKSFVCADCGAAYKQKRTLKLHIEAVHMHLKYICGVCEKDFPRKDSLKAHFDDKHCDGGKRYACEQCEQTFGRRRNLTTHVQWVHNRLNRLTCDSCDRCFKSKSTLARHYHFKHEPRKFICDICGGSYSMKAKLKIHMTSEHFRLKDFVCEQCGGAFKHRGALVRHHRIVHMTKNFACTECDYAFATKCILKLHFDSVHLKIKKYQCSECNASYSRNQKLKQHVDAMHRQLKLVCEHCERTFTRPDYLKIHLEAVHYKLKKYKCPECGKAFARSQQMNIHARTMHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01008688;
- 90% Identity
- -
- 80% Identity
- -