Maru029405.1
Basic Information
- Insect
- Micropterix aruncella
- Gene Symbol
- -
- Assembly
- GCA_944547385.1
- Location
- CALYMV010006364.1:45807-59517[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0013 0.078 14.6 0.5 2 23 42 63 41 63 0.96 2 22 0.012 0.75 11.5 1.7 1 23 67 89 67 89 0.95 3 22 8.8e-05 0.0054 18.3 0.3 1 23 94 116 94 116 0.97 4 22 0.011 0.65 11.7 3.2 2 23 120 142 119 142 0.94 5 22 0.00064 0.039 15.6 3.5 1 23 148 171 148 171 0.96 6 22 0.00012 0.007 17.9 0.5 1 23 178 200 178 200 0.97 7 22 2.9e-05 0.0017 19.8 2.9 1 23 206 228 206 228 0.97 8 22 0.021 1.2 10.8 2.4 2 23 259 280 258 280 0.96 9 22 0.025 1.5 10.6 1.9 1 23 284 306 284 306 0.98 10 22 0.0089 0.54 12.0 0.5 1 20 311 330 311 333 0.91 11 22 0.24 15 7.4 3.3 2 23 337 359 336 359 0.92 12 22 0.02 1.2 10.9 3.3 1 23 365 388 365 388 0.91 13 22 0.0003 0.018 16.6 0.2 1 23 395 417 395 417 0.97 14 22 4.1e-05 0.0025 19.3 0.4 1 23 423 445 423 445 0.97 15 22 0.0013 0.078 14.6 0.5 2 23 476 497 475 497 0.96 16 22 0.0042 0.25 13.0 2.1 1 23 501 523 501 523 0.97 17 22 0.00054 0.033 15.8 0.4 1 23 528 550 528 550 0.95 18 22 0.36 22 6.9 2.2 2 23 554 576 553 576 0.92 19 22 1.1e-05 0.00067 21.1 1.7 1 23 582 605 582 605 0.97 20 22 0.00053 0.032 15.8 0.3 1 23 612 634 612 634 0.94 21 22 2.9e-05 0.0017 19.8 2.4 1 23 640 662 640 662 0.95 22 22 0.002 0.12 14.0 5.3 1 23 668 690 668 690 0.98
Sequence Information
- Coding Sequence
- ATGGTTTCGATAACATACTGGTTCATTGGATGCAACAAGCTTATGACGTTTGGCGGTAAGCTCGGAGAGATTGTGAAGGCTCAGAAAGAAGAATTGCGAAACGCGATGGACTTAGAAAAGCTACAGTGTCGCGTCTGCTCTAAGCTGTTCAATTACCGTCCAAATCTAGCTACCCACATGAACGAACACTTCATTAATTACACCTGCGAGAAGTGCGGAAAGGGGTTCGCAACGTACGGCCGCCACAAAAACCACGCGAGGATCCACACGTTCGGCACGTTCCCATGCAAGAAATGCGGGAAGGTGTACGATACAAAGAGCAAATGGGAGAGCCATGGAATGGTGCATATACGACTCAACTGCGAACACTGCCCGCTGAAGTTTAAATCGCTTTCGCACAAGCGCATTCACTTGCGCGACGCACACGGCGAACCGAACAAGTTCCCGTGCCCCCACTGCAACCTCACGTTCATACTGCAGCACGCCCTTACAAAACACACGAAGAACCGCCACAGCATACGCGAACGCCAATTTAAATGCGACAAGTGCGATAAAGAATTTTTCGATAAAGACACCCTCACGGGCCACGCGATTGTTCACAGCACCGCAAAGAATTTTCCTTGCACTTTCTGCTCGAAAACCTTCGCTAGAAAGAGAAACCTCAAACAACACTCCAAGATCCACCTCAATATAAGGAACTTCATTTGTAAGCTCGAGGAGATTATGAAGGCCGAAGAGAAGGAATTGCGTAATGCGATGGACTTGGAAAAGCTCCAGTGTCGCATCTGCTCGAAGGTGTTCAATTGCCGTCGCAATCTTGCCACTCACCTGAACGAGCATTTCGTTAACTACACGTGCGAGAAGTGCGGGCAGGGGTTCGCCTCGTacggccgccatcaaaaacacgcGAGGACCCACACGGTCGGGACGTTCCTCTGCAACCAATGCGGGAAGGTGTACGACACGAAGGCCAAATGGCAAAACCACAAATGGATACATTCACAGATAAAATGCGACCACTGCCCGCAGAGGTTTAAATCGCTTTTGAAGAAGCGGATACACATGCACGAGGCGCACGGCACACCGAACAAGTTCCCGTGCCCGCACTGCAACCTCACGTTCATACTGTCGGAATACCTCGCAAAGCACTGTAGAAACCGCCACAGTATGCGAGAACGCCAGTTCAAATGCGACAAGTGCGACAAAGAATTCTTCGACAGAGACACGCTCATCGGCCACGCGATCGTTCACAACGCGGCAAAGAATTTTCCTTGCGCCGTCTGCTCGAAATCCTTCGCGCGAAAGAACAACCTCGTACAACACTCCAAGATCCACCTGAATATAAGAAATTTTGTCTGTAAGCACGTGGAGATTACAAAGGCTCAAAGGGAGGAATTGCGCAACGCAATGGACTTAGAAAAGCTCCAGTGTCGCGTCTGCTCGAAGCTGTTCAATTACCGTCCCAATCTAGCTACTCACATGAACGAGCACTTCATTAATTATACGTGCGATAAATGCGGGAAAGGATTCGCTACGTATAGCCGCCACATAAATCACGCGAGAACCCACATGGTCGGGTCGTTCCCGTGTAAGAAATGCGGTCGGGTGTACGACACAAAGAGCAAATGGGAGAGCCACGGGACGGTGCACACGAAGCTGAACTGCGACCACTGTCCGCAGAAGTTTAAATCGCTTCTACGTAAGCGCATGCATATGCGCGACGCGCACGGCGAGCCCAACAGGTTCCCGTGCCCCCACTGCGACCTCACGTTTATTATGAAATACTACCTCAACAAGCACATCAAGATCCGTCACAGCATACGCGAGCGCCAGTTCAAATGCGACAAGTGCGACAAGGACTTCTTCGACAAAGACACCCTCGAGGGCCACGCGGTCGTCCACAGCACCGCCAAGAACTTTCTCTGCACCTTCTGCTCTAAAACCTTCGCGAGGAAGAACAACCTCAAACAGCACGTGAAGATCCATCTCAATATAAGAAATTTTGTCTGTGCATACTGCAACCAGGATTTTGTACACAAATGCTCCCTACAGTCGCATCTGAAGAAGCATGAGAagcaaataaaagtaaaattatag
- Protein Sequence
- MVSITYWFIGCNKLMTFGGKLGEIVKAQKEELRNAMDLEKLQCRVCSKLFNYRPNLATHMNEHFINYTCEKCGKGFATYGRHKNHARIHTFGTFPCKKCGKVYDTKSKWESHGMVHIRLNCEHCPLKFKSLSHKRIHLRDAHGEPNKFPCPHCNLTFILQHALTKHTKNRHSIRERQFKCDKCDKEFFDKDTLTGHAIVHSTAKNFPCTFCSKTFARKRNLKQHSKIHLNIRNFICKLEEIMKAEEKELRNAMDLEKLQCRICSKVFNCRRNLATHLNEHFVNYTCEKCGQGFASYGRHQKHARTHTVGTFLCNQCGKVYDTKAKWQNHKWIHSQIKCDHCPQRFKSLLKKRIHMHEAHGTPNKFPCPHCNLTFILSEYLAKHCRNRHSMRERQFKCDKCDKEFFDRDTLIGHAIVHNAAKNFPCAVCSKSFARKNNLVQHSKIHLNIRNFVCKHVEITKAQREELRNAMDLEKLQCRVCSKLFNYRPNLATHMNEHFINYTCDKCGKGFATYSRHINHARTHMVGSFPCKKCGRVYDTKSKWESHGTVHTKLNCDHCPQKFKSLLRKRMHMRDAHGEPNRFPCPHCDLTFIMKYYLNKHIKIRHSIRERQFKCDKCDKDFFDKDTLEGHAVVHSTAKNFLCTFCSKTFARKNNLKQHVKIHLNIRNFVCAYCNQDFVHKCSLQSHLKKHEKQIKVKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -