Maru018856.1
Basic Information
- Insect
- Micropterix aruncella
- Gene Symbol
- -
- Assembly
- GCA_944547385.1
- Location
- CALYMV010003270.1:44886-55492[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.14 8.2 8.2 3.3 1 23 127 150 127 150 0.95 2 16 0.074 4.5 9.1 0.0 1 23 156 179 156 179 0.94 3 16 8e-07 4.8e-05 24.7 0.7 1 23 185 208 185 208 0.93 4 16 0.00057 0.034 15.7 0.3 1 23 214 237 214 237 0.97 5 16 8.4e-06 0.00051 21.5 0.4 1 23 242 265 242 265 0.92 6 16 6.1e-06 0.00037 21.9 0.1 1 23 270 293 270 293 0.92 7 16 0.00019 0.011 17.2 0.1 1 21 299 319 299 322 0.90 8 16 0.0054 0.33 12.7 1.2 1 23 328 351 328 351 0.92 9 16 9.7e-05 0.0059 18.1 0.3 1 23 356 379 356 379 0.92 10 16 2.2e-05 0.0013 20.2 0.5 1 23 384 407 384 407 0.93 11 16 0.00027 0.016 16.7 0.1 1 23 413 436 413 436 0.97 12 16 0.033 2 10.2 0.1 7 23 447 464 441 464 0.85 13 16 2e-05 0.0012 20.3 0.3 1 23 469 492 469 492 0.92 14 16 1.3e-06 7.7e-05 24.1 0.2 1 23 497 520 497 520 0.97 15 16 8.6e-06 0.00052 21.5 0.2 1 23 526 549 526 549 0.97 16 16 2.5 1.5e+02 4.3 1.4 1 13 555 567 555 571 0.91
Sequence Information
- Coding Sequence
- ATGGAAGAAGATATCGTTATTAAAACGGAGATCGATTCTGGCGATACAAATTCGACTATTCCTCTAAGTGATTTCATACCAGATGAACGAGGCAATGTACTTGAATTCGACAAAAGCGAAACCCCGTTCACAACATCAGAACCGATCGAAGCTGGTGTGATTGTAAAGATGGAAGATGTTGTTATTAAAATGGAGACTGATTCTGGCGATACAAATTCGAGTATTCCGCTAAGCGATTTCATAGCAGATGAACGAGGGAATGAACTTGCAATCGATGAAGATGCGACTCGGTTCACAAAACCAGAACCAATCGAAGCTGGGCCACCCggaagtagtaatattattgaaaGTGGATCAAATAGTGGACGTATCACATCACATGATTGTCCGCAGTGCGACATGCGGTTTCAGTGCGAGAGCCAATTAAATTTGCACATAAATAGTTTTCATGTACTATTGAAGGAATTTCCATGTGATGAATGTGGCCTTCTTTTCCCGTGGTTAAGTAATTTAATGTTACATCTGAACGCAGCTCACGAGAAATCTAAGAAATATACATGTGAAGAATGCGGTCGGTATTTTACacgaaaagaaaatttaaagaaacatttaGACGGAGTTCACAAGAAATTGAAGAAGTACTCATGTGAAGAATGCGATCTCGCATTTGCatataaaagatttttaaagTATCATATAATTTCAGTTCACAAGAAATTGAAGTACTCTTGTGGAGAATGCAATCGCTCTTTTacagagaaaggaaatttaaagaaacatttaGACGGAGTTCACAAGAAATTGAAATACTCATGTGGAGAATGTGATCGCGCTTTTACACAGAAAGGAAATTTGAAGATTCATTTAGACGCGGTTCACGAGAAATTGAAGAAGTACTCATGTGGAGAATGCGGTCTTGCTTTTGCGCGAAAAGAAGGTTTAAAGAAACATTTCGATGCTGTTCACAACAAATTAAAGAAGTATTCGTGTGGAGAGTGCGATCGCGCTTTTGCACATAAAGCAAGTTTGATGTGTCATTTAGATTCAGTTCACAAGAAATTGAAATACCGATGTGGAGAATGTGATCGCGCGTTTGCatataaaagatatttaaagaGTCATTTAGACGCAGTTCACAAGAAATTGAAGTACTCATGTGGTCAATGCGATCGCGCTTTTACACGAAAAGGATATTTAAAGAGTCATTTAGACTTAGTTCACAAGAAATTAAAGAAGTACTCATGTGGTGAATGCGATCTCGCATTTGCATATAAAGGAACTTTAAAGTATCATATAATTTCAGTTCACAAGAAATTGAAGTACTCTTGTGGAGAAAGCAATCGCTCTTTTACagataaaggaaatttaaagaaacatttaGACGGAGTTCACAAGAAATGGAATTACTCATGTGGAGAATGCAATCGCTCTTTTacagagaaaggaaatttaaagaCACATTTAGACGGAGTTCACAAGAAATTGAAATACTCGTGTGGAGAATGTGATCGCGCTTTTACACAGAAAGGAAATTTGAAGATTCATTTAGACACAGTTCACAAGAAATTGAAGAAGTACTCATGTGGAGAATGCGGCCTTGTTTTTTCGCGAAAAGAAGGGTTAAAGAATCATTCGAACACTGTTCACAAGAAATTAAAGAAGTATTCGTGTGGAGAATGCGATTGCGCTTTTGCACATAAACCAACACGGACGTCTTGCGGGGTCGGGCACAGACTGCCTCGAAGACGGCCCCTGAAGAGGTGCTTGAAGAGCGAAGATGAAAGGCTGCTTCTGGAGAGCGGAGCAGGAACGCTTGAAGGAACGATGGGCGCACGCGGAGCGGCGGCCGTCAACTATCGCCCGGGGCGGGCACCGCAGCTGAAGCGGGCGACGGGGCGCTCAACTCCTGAGCGCGCCCCCGGCGAAGGAGAACGGCCGCTGTTCCGCGTGGCCGAAGGCGAGGAAGAATATCAGGCCATCGCTGGTTTCCGGCGAGGAGACGCGCACGCGCACTGA
- Protein Sequence
- MEEDIVIKTEIDSGDTNSTIPLSDFIPDERGNVLEFDKSETPFTTSEPIEAGVIVKMEDVVIKMETDSGDTNSSIPLSDFIADERGNELAIDEDATRFTKPEPIEAGPPGSSNIIESGSNSGRITSHDCPQCDMRFQCESQLNLHINSFHVLLKEFPCDECGLLFPWLSNLMLHLNAAHEKSKKYTCEECGRYFTRKENLKKHLDGVHKKLKKYSCEECDLAFAYKRFLKYHIISVHKKLKYSCGECNRSFTEKGNLKKHLDGVHKKLKYSCGECDRAFTQKGNLKIHLDAVHEKLKKYSCGECGLAFARKEGLKKHFDAVHNKLKKYSCGECDRAFAHKASLMCHLDSVHKKLKYRCGECDRAFAYKRYLKSHLDAVHKKLKYSCGQCDRAFTRKGYLKSHLDLVHKKLKKYSCGECDLAFAYKGTLKYHIISVHKKLKYSCGESNRSFTDKGNLKKHLDGVHKKWNYSCGECNRSFTEKGNLKTHLDGVHKKLKYSCGECDRAFTQKGNLKIHLDTVHKKLKKYSCGECGLVFSRKEGLKNHSNTVHKKLKKYSCGECDCAFAHKPTRTSCGVGHRLPRRRPLKRCLKSEDERLLLESGAGTLEGTMGARGAAAVNYRPGRAPQLKRATGRSTPERAPGEGERPLFRVAEGEEEYQAIAGFRRGDAHAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -