Basic Information

Gene Symbol
ct
Assembly
GCA_944547385.1
Location
CALYMV010001434.1:111193-114936[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 4.2e-32 5.8e-28 97.9 0.0 4 77 333 407 331 409 0.96
2 2 4.9e-31 6.8e-27 94.5 0.0 3 75 550 623 548 627 0.95

Sequence Information

Coding Sequence
ATGCCGCCTTTTGGAAGACCCGATGGTGGCGATGTTAACGACGATAGACTGGCTCATATCCTCAACGAAGCTTCGCACGTGATGAAGACGCCGGGTTTGGCAAACAACGACGATTCCAGAAGTAACGAAGACTCTAGCTCGCCGCGTGATCAATGCACATCGCCTTTCTCCAAaGATTCCAGCCAGAATCGCCGTTTGAAAAAATACGACAACGATGATATCCCGCAGGAAAAAGTAGTTAGAATTTACCAAGAAGAATTAGCGAAATTGATGGGTCGACGAATGGAGGACATGCGGCAACCGCGCGAAGGCTTCCCTGGTTTTTTCTTTCCGCATTTTCTCAGCGGCGGTCTACCACCACACATGGAGCGAGCGCACGACGACAACGTGAGAATGGCCCTGGAGGCGTACCACAGAGAGCTGGCGAAGCTGCAGCAGGGCGGCGGGAACATGCCGCCGATGCCGAACATGCCGGGGTTTCCAAGTCTACTCGCGCTGCAGCAGCAGGCGATACACCAAGCGCAGCAGGCGCAGCAAGCGCAGGCGCAAGCGCAAGCGCAAAACCAGCGCCCGCTGTCGAATAACCCGCACGTGAACGGGTCCGGCGCCTGCGTCCAGGATCTCTCACTGCCCAAAGAAAAATTAGCGAAAATGAACGGAATCTCTGATGATAAAGAGAAAGCGCTCGACGCTGAAGAGGCGCTGCGGCACGCCGGGAGCGCGTTCAGCCTCGTTCGACCCAAATTAGAACCTGGAACCCAGCACTCGACCGGCTCTTCGGCATCGAGCCCGCTCGGAAACACAATCCTGCCTCCGGCGATCACTCCAAACGACGACTTCAACAGCTCAGCAGCTGCGAGCCCCCTACAAAGAATGGCATCGATAACGAATAGTCTCATCTCACAACCGTCGAACCCAACGCATCACTCATCCTCGCAGCGTCCGATGAAAGCTGTTCTACCGCCAATCACTCAGCAGCAATTCGATCTCTTTAACAATTTAAACACAGAAGATATTGTGAAGCGGGTGAAGGAATCACTCAGCCAGTACTCGATAAGCCAGCGTTTGTTCGGTGAGTCGGTTTTGGGTTTATCGCAAGGTTCTGTGAGCGATTTATTAGCGCGGCCCAAACCGTGGCACATGCTCACCCAAAAAGGCAGGGAACCGTTCATAAGGATGAAAATGTTTCTAGAAGATGATAACGCGGTGCACAAGCTGGTGGCTTCGCAGTACAAAATCGCCCCGGAGAAGCTGATGAGGACTGGTAGCTACGGCGGAATACCACAAGGCCCGCCAAATATGAACAAGCCGCTGCCCCCGACTCCGAAAATGATATCGGACGCGACGCACCTTTTGAGTAAAATGCAGCAAGAGCAGCAGTCGCTCCTGCCGCCGTCAATGCAGCTGGGTCCGCCACCGCAAGGCCCCCCAGGTCAAACCCCGATGCTGCTCACTCCGCCCGGCTTCCCGCCGCACCACGCCATAACCATACCCCAAACGCCAAACAGCGAAATGAAACAGATTAAACCGCAGCATCCTCCCCATCATCACCTGCAGCACTCTCCTATGAATCACCAACAGAGCTCTGTGATGAGAGCGCTGCACCAGCACATCTCCCCCAGCGTCTACGAAATGGCCGCTCTAACCCAGGATCTCGACACGCAAACGATCACCACCAAGATAAAAGAAGCGCTCCTAGCGAATAACATAGGACAGAAGATCTTCGGGGAGGCGGTCCTCGGTTTATCGCAAGGGTCCGTCAGCGAGCTGCTCTCGAAGCCCAAACCCTGGCACATGCTGAGTATAAAAGGGAGAGAGCCATTTATTCGTATGCAGTTGTGGCTGAGCGACGCTCACAACGTGGATCGGCTCCAAGCGCTGAAGAACGAACGCAGAGAAGCGAATAAGCGCCGCCGCTCGACCGGCGCCGGCGCACAAGACAACTCCTCGGACACTTCATCCAATGATACATCGGAGTTCTATCACTCGAATTCGCCGGGACCGAACCCGAACGGACCCCCATCCGCCAAGAAACAAAGAGTCTTATTCTCGGAAGAGCAGAAAGAAGCCTTGCGCCTCGCGTTCGCGTTGGATCCATACCCGAACATGGCGACTATAGAATTCCTGGCGACCGAACTCGGCCTTTCTACGAGAACAATCACGAATTGGTTCCACAATCACCGCATGCGGTTAAAACAACAAGTACCGCACGGTATGCCGAATGAACTGCCCGTTCGCGATCAATCGGGCAATCAGCCGCCGTTCGATCCGGTCCAATTCCGACTGCTCCTCAATCAGAGATTGCTCGAGCTGCAGAAGGAGAGGATGGGTTTAGCCGGCGTGCCGCTTCCTTATCCGCCGTATTTCGCCGCGAACCCTAACCTGGCAGCGTTGATCAGTCGGGGTCTGCTTCCGAGCGGTGAGATGGATCTCAACGCGTTGAACAACGCGGTGAAGGAGCAGATGAGCGGGCTCGACCTCTCGATGCCCGCGCTCAAGAGAGAACCCGACGGCGACGACTTCGACGACGACGACGTCGATAGCAACATGGGTTCGGACGATTCGGACGATCGGAGTTTTATCGACGGGGACGGTAATAAAATGGAGCCGAAATCGTCGTCGACGCCTGCGCAGATGGGTCACGGCGGGCGCTCGAATCGGAGAAAACCCGCCGCCCCCCAATGGGTCAACCCCGACTGGCAAGACGACAAGGACAAGCCCATAAACCCGGACGAGGTCATCATCAACGGCGTCTGCGTGATGCAGACCGAGGACTACGGCAGGCGATCCGCGGAGGAGACGGTCCGCATTGAACCCACCCCTGTGCTCGACCGCTTCGCCGAAGCCGAAGAAACCGACGAAGTCGCGTCGATCAACTCCAAAGGCGAAGAACCCCCTAAAAGTGAAAACGACCAAGTCAAAGACACTGGAAAATGTGAGAGTGGCCAAGTGGACGACGAGGACCTATCGACGCACAACGACGACGCAGACGATTTAGataaaaccaatttaaaaatcgaaagcGAAGAAGACCACTGggaatattaa
Protein Sequence
MPPFGRPDGGDVNDDRLAHILNEASHVMKTPGLANNDDSRSNEDSSSPRDQCTSPFSKDSSQNRRLKKYDNDDIPQEKVVRIYQEELAKLMGRRMEDMRQPREGFPGFFFPHFLSGGLPPHMERAHDDNVRMALEAYHRELAKLQQGGGNMPPMPNMPGFPSLLALQQQAIHQAQQAQQAQAQAQAQNQRPLSNNPHVNGSGACVQDLSLPKEKLAKMNGISDDKEKALDAEEALRHAGSAFSLVRPKLEPGTQHSTGSSASSPLGNTILPPAITPNDDFNSSAAASPLQRMASITNSLISQPSNPTHHSSSQRPMKAVLPPITQQQFDLFNNLNTEDIVKRVKESLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGSYGGIPQGPPNMNKPLPPTPKMISDATHLLSKMQQEQQSLLPPSMQLGPPPQGPPGQTPMLLTPPGFPPHHAITIPQTPNSEMKQIKPQHPPHHHLQHSPMNHQQSSVMRALHQHISPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNVDRLQALKNERREANKRRRSTGAGAQDNSSDTSSNDTSEFYHSNSPGPNPNGPPSAKKQRVLFSEEQKEALRLAFALDPYPNMATIEFLATELGLSTRTITNWFHNHRMRLKQQVPHGMPNELPVRDQSGNQPPFDPVQFRLLLNQRLLELQKERMGLAGVPLPYPPYFAANPNLAALISRGLLPSGEMDLNALNNAVKEQMSGLDLSMPALKREPDGDDFDDDDVDSNMGSDDSDDRSFIDGDGNKMEPKSSSTPAQMGHGGRSNRRKPAAPQWVNPDWQDDKDKPINPDEVIINGVCVMQTEDYGRRSAEETVRIEPTPVLDRFAEAEETDEVASINSKGEEPPKSENDQVKDTGKCESGQVDDEDLSTHNDDADDLDKTNLKIESEEDHWEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01006896;
90% Identity
iTF_01006896;
80% Identity
iTF_01006896;