Basic Information

Insect: Microplitis mediator
Gene Symbol: -
Assembly: GCA_029852145.1
Location: CM056847.1:2064489-2067040[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 4.5e-05 0.0065 17.8 2.1 1 23 289 312 289 312 0.96

2 9 8e-05 0.012 17.0 0.1 1 23 317 339 317 339 0.99

3 9 0.0061 0.87 11.1 0.3 1 23 345 368 345 368 0.97

4 9 0.0095 1.4 10.5 0.8 2 23 375 397 374 397 0.95

5 9 0.08 12 7.6 4.4 1 23 413 436 413 436 0.97

6 9 2.4 3.5e+02 2.9 0.9 1 23 472 495 472 495 0.85

7 9 0.012 1.7 10.2 3.4 2 23 505 526 504 526 0.96

8 9 0.19 27 6.4 2.9 1 23 532 554 532 554 0.97

9 9 0.0028 0.4 12.2 2.6 1 23 560 583 560 583 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	4.5e-05	0.0065	17.8	2.1	1	23	289	312	289	312	0.96
2	9	8e-05	0.012	17.0	0.1	1	23	317	339	317	339	0.99
3	9	0.0061	0.87	11.1	0.3	1	23	345	368	345	368	0.97
4	9	0.0095	1.4	10.5	0.8	2	23	375	397	374	397	0.95
5	9	0.08	12	7.6	4.4	1	23	413	436	413	436	0.97
6	9	2.4	3.5e+02	2.9	0.9	1	23	472	495	472	495	0.85
7	9	0.012	1.7	10.2	3.4	2	23	505	526	504	526	0.96
8	9	0.19	27	6.4	2.9	1	23	532	554	532	554	0.97
9	9	0.0028	0.4	12.2	2.6	1	23	560	583	560	583	0.96

Sequence Information

Coding Sequence: atgcatgCGAAAGAAGTTATTGAGATTAGTGACGATGAGACAGATCGCGATGATTCTGATGTAGAATTCCTGTATGACacagttCCGGTATCACAGCGCAGGATCGTAAATCCTGTGAGTAAATCAGCTGGTGCTGATTCGAATAAGAGATCGaactcattttttattgaagaTGAGACGATGGATGACAACCATCATTACTATTTAATGCAAGAGTTGTCAGATGTTTTGGGTTCATGTAATCCGAGTGTTGAACGACAGTCTGACATACGGACGTCAAATACTGACTCAGTATCTCAAGTTGctgataaaagttttattcctggtttaaataataatttttatgagaactCAAATGCACTAAATCGCATTGAGATACTGAAGGTCGAGTCATTGAATGAAAGCGAAGAAAGTTGGATGGAGAGTAAAGATGACAGTACGGAAGAGATAACATTTGTCCCAgttaatgacaataaaaataatttaactgatgaaatagaatttaaaagaagttttatgaatattaaagTTACTGAAGATGATTCCGGAAATAGCTCTGGAAGTATTGACAGTGAATCAAACCCGGATGCATGTTCTTGGGATAAATTTCCCATTGACCAACACGAGCTAAATATTCTACGAAAATATCTTCCTTTTGTTCAgctcagaaattttttactgccCGATAGCAGCAGCGAGTCATCAAATGATTCTGTTGGTTTGGCAGACCATGAGCTGGAGCAAAATCCCCCACAAATTGACATCCCCAATAATTTAGAATCAGAGTTCATAGAAAGTCGTGTTTTGGAaatgaaaaaagaatttaaatttgatcaaGAGCTGGACATTCAAGAGCCATTGAATTACGAGTGTGAGCAGTGCAGGAAATCATTTAAATCAGAGGATCTGCTGAAATATCACGTCAAGTATCGGCACCGTGGCAAAAGTTATGAATGCGCAGAGTGCGAATTTGCGACTAGTTCTAAACCATCATTAATTCAACACATGCGTATTCACAGTAACATACGTCCCTACAAATGCCCGTACTGTTTGTACGCATCTTCAGTTTCCGCTAATACAAAAAATCACATTATGAATATGCATATGAACAAGCGGCCTTTGAAGTGTACGGAGTGCGAGTACACGTCAATTTATTCAGGAAAATTAAGAGCgcacaaaataaaaaagcatTTTCGTGATCCCTCGAGTTCAACTAATGCTTTACAGATTGAAAATTATGCCTGTGGTTACTGCAATTATAAAGCAGTCACTACACgtcatataaattatcacaTGCGTACCTGTCACagtgatgtgaaaaaaaaattcaaatcctCAAAATGTCCCGTTTCTCAAAATCATCACAATAATTCTTTTGGATTCCCCGCGCAGGATTatggcggtaaaaaaaaatataagtgcgATGTTTGTATggcaaaatttaaaactttacgTGGAATTGATAATCACAAGTCGAATTATCATTCAATAAATCCATTTAGCAAAACACTCAACTGCCAATTTTGTCAAGATACTTTTACGAATGTGCATAATTTGAAGCTTCATACTAATACTCATAAGAAAGTTAATTTTCACAAATGTACTGAATGTCTCTACACAACAACTCTTGTCACGAGACTTGAAAAACACATGACAAGTCATGTAAACAATAAACTATTCGTTTGCAATGACTGCAGTAAAGCATTTaagctcaagaaaattttaaaacaacacaggaaaaattttcattag
Protein Sequence: MHAKEVIEISDDETDRDDSDVEFLYDTVPVSQRRIVNPVSKSAGADSNKRSNSFFIEDETMDDNHHYYLMQELSDVLGSCNPSVERQSDIRTSNTDSVSQVADKSFIPGLNNNFYENSNALNRIEILKVESLNESEESWMESKDDSTEEITFVPVNDNKNNLTDEIEFKRSFMNIKVTEDDSGNSSGSIDSESNPDACSWDKFPIDQHELNILRKYLPFVQLRNFLLPDSSSESSNDSVGLADHELEQNPPQIDIPNNLESEFIESRVLEMKKEFKFDQELDIQEPLNYECEQCRKSFKSEDLLKYHVKYRHRGKSYECAECEFATSSKPSLIQHMRIHSNIRPYKCPYCLYASSVSANTKNHIMNMHMNKRPLKCTECEYTSIYSGKLRAHKIKKHFRDPSSSTNALQIENYACGYCNYKAVTTRHINYHMRTCHSDVKKKFKSSKCPVSQNHHNNSFGFPAQDYGGKKKYKCDVCMAKFKTLRGIDNHKSNYHSINPFSKTLNCQFCQDTFTNVHNLKLHTNTHKKVNFHKCTECLYTTTLVTRLEKHMTSHVNNKLFVCNDCSKAFKLKKILKQHRKNFH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -