Basic Information

Insect: Microplitis mediator
Gene Symbol: Clamp
Assembly: GCA_029852145.1
Location: CM056855.1:16686434-16691040[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 3.2e-05 0.0046 18.3 1.1 1 23 203 225 203 225 0.99

2 8 0.00033 0.047 15.1 0.4 1 23 256 279 256 279 0.93

3 8 9.3e-05 0.013 16.8 2.6 1 23 378 400 378 400 0.97

4 8 3.7e-05 0.0053 18.1 0.1 1 23 406 428 406 428 0.98

5 8 7.7e-05 0.011 17.1 1.6 1 23 434 456 434 456 0.98

6 8 4.8e-07 6.9e-05 24.0 1.9 1 23 462 484 462 484 0.99

7 8 1.8e-05 0.0026 19.1 1.5 1 23 490 512 490 512 0.98

8 8 4.8e-05 0.0068 17.7 0.6 1 23 518 540 518 540 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	3.2e-05	0.0046	18.3	1.1	1	23	203	225	203	225	0.99
2	8	0.00033	0.047	15.1	0.4	1	23	256	279	256	279	0.93
3	8	9.3e-05	0.013	16.8	2.6	1	23	378	400	378	400	0.97
4	8	3.7e-05	0.0053	18.1	0.1	1	23	406	428	406	428	0.98
5	8	7.7e-05	0.011	17.1	1.6	1	23	434	456	434	456	0.98
6	8	4.8e-07	6.9e-05	24.0	1.9	1	23	462	484	462	484	0.99
7	8	1.8e-05	0.0026	19.1	1.5	1	23	490	512	490	512	0.98
8	8	4.8e-05	0.0068	17.7	0.6	1	23	518	540	518	540	0.97

Sequence Information

Coding Sequence: ATGGCCCTAGAGTCAAATGGTAACAACGTGGTATGGTTGAGTACAACCCATCCTGATCAAATACAGCAGCACATTGTTATCAAAGACGAGACACTGCAAATTGATGATAGCGAAGATCAACACCAGCAGCATCGGTTTCAACGTGATTTGATTAAAATACCAAATCAATCGAGTCAACAGGTTGAGCAACCAGTCAAGTGTTCCATGTTTACTCAAACGGAGCAGACCAATAGTTTTACTCAGACAGAACAAAGTAACTCTAGTTATACGGACCAACGTCAGCCTCAACTAGCAAACATGTTTGATCCACAACAAATCCAGCAGCAGCAAGCTGCTCAGAGTCAGCAGTCACAGCAGCAGCAGACGCAGCAGATGTACGTCACGGAGAAGAAAGAAGACAAATCTCAGCAGCAGACAACAACAGCTGACTTTCCGTATTTTTACAATGTCAATATGGTGCAGAAACTACAGGCCAATGCGGTTAGCACTATAAGTGCAATAACCACCGACGATAAAGGCTGCTATCGTTTTGACGTCCAGCCAGCCGCTGGTTACAATTCACTTCTAAATCAAATGAGTATAGCCGCTGCTGCAACCAATGCCATTTTTAAATGTGATTTGTGTGGACTCGTTTTTGGGCATATGAGTCTGCTTACTAGCCACAAGAGGATCCACAATACAACACCAAGTAGTCTTCAGCAACCACAGCAAGTTGTAGTCCAGACTCCTACTACTGTCACGGTTGCTACCACACCTGAGCGCCCTTACACTTGTGATGTATGCGGCGCTTGTTTTGCGTTACCTGGTGAATTAAAAAGCCACAAAACGAACATGCATCAGAAACCCAAGGTACAGGCATGTGAAGAATGTGGGAGTGAAGATCCTTGTGAGCATAATCCTACTAAAGTTAAAAAGAcaaTCAAACCTGGACATCATCCTGTCAAACGACGAGGAGTGACCAGTGTTACCAAGTGCCACAAATGCAACGGAAcgggaattatttttatcgGTAAAGATGAAGAAAAACTTGATTCTGGAATCAGTTCTCTTGCGAAGTGTGGCGTCTGCAAGGCAACAGGCCACATCACCATCGGAAGCGGCAAGCAAAATCAGAACCAGCCGGAGAAGCCATTTCATTGTAATGTTTGCGATGGAACATTTTCACGCTATTCGTCGCTTTGGTCCCACAAGAGACTTCATTCTGGAGACAAGCCATTTAAATGCGAAGTCTGTAATCTTGCCTTTGCTAAGGcggcatatttgaaaaatcatgGACGTGTTCATACCGGCGAAAAGCCATTTAAGTGTAGCGTATGTGCTATGCAATTTTCTCAGAGTCCTCACTTGAAGAATCATGAGAGAATTCATTCGGGCGAGCGTCCGTATCAGTGTGAAGTGTGTGAAAAAACATTTGCAAGACACTCAACACTCTGGAACCATCGGAGAATTCATACTGGCGAAAAACCGTATCGCTGTAATACGTGTGGTTCAGCTTTCAATCAGGCGACGCACTTGAAAAATCACGCAAAGGTTCACACTGGAGAAAAACCTCAcagaTGTGATATTTGTGAGATTGGATTTTCTGATCGTTTTGCTTTGAAACGTCATCGGGCCATTCACGAAAAGTACGGGCAGACCGCACGAAATCAGAACGCTAACAGTGCAAGTAATACGCAACAGCCAAACACGAGTAAtcagcagcaacagcagcagcaacagcagcagcagcaacaacagcaacaacaacagcagcagcagcagcaacaacagcagcagcagcagcccCAACAAGCTCAACAGGGGCAACAAGTTGTTGTGGTGAATGCCACCACGCCATTGACTATTAGTCAAGGCCAGGGACAGACAGTAATGCTTGATGAAGTTTACAAATGTCAAGTGGCCTTCCCGGAGcctaaataa
Protein Sequence: MALESNGNNVVWLSTTHPDQIQQHIVIKDETLQIDDSEDQHQQHRFQRDLIKIPNQSSQQVEQPVKCSMFTQTEQTNSFTQTEQSNSSYTDQRQPQLANMFDPQQIQQQQAAQSQQSQQQQTQQMYVTEKKEDKSQQQTTTADFPYFYNVNMVQKLQANAVSTISAITTDDKGCYRFDVQPAAGYNSLLNQMSIAAAATNAIFKCDLCGLVFGHMSLLTSHKRIHNTTPSSLQQPQQVVVQTPTTVTVATTPERPYTCDVCGACFALPGELKSHKTNMHQKPKVQACEECGSEDPCEHNPTKVKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKDEEKLDSGISSLAKCGVCKATGHITIGSGKQNQNQPEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCNLAFAKAAYLKNHGRVHTGEKPFKCSVCAMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNTCGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARNQNANSASNTQQPNTSNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQAQQGQQVVVVNATTPLTISQGQGQTVMLDEVYKCQVAFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01514338;
90% Identity: iTF_01003772;
80% Identity: -