Basic Information

Insect: Microplitis mediator
Gene Symbol: -
Assembly: GCA_029852145.1
Location: CM056851.1:957707-960195[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.2 1.7e+02 3.9 4.8 1 23 341 363 341 363 0.95

2 9 2.2e-06 0.00032 21.9 0.3 1 23 369 391 369 391 0.98

3 9 0.00015 0.021 16.2 1.0 1 23 397 419 397 419 0.98

4 9 9.7e-07 0.00014 23.1 0.9 1 23 428 450 428 450 0.98

5 9 6.8e-05 0.0097 17.3 0.9 1 23 456 478 456 478 0.97

6 9 4.6e-05 0.0066 17.8 1.2 1 23 484 506 484 506 0.95

7 9 0.00029 0.041 15.3 4.4 1 23 512 534 512 534 0.98

8 9 0.00017 0.024 16.0 1.5 1 23 540 562 540 562 0.97

9 9 8.3e-08 1.2e-05 26.4 1.8 1 23 568 591 568 591 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.2	1.7e+02	3.9	4.8	1	23	341	363	341	363	0.95
2	9	2.2e-06	0.00032	21.9	0.3	1	23	369	391	369	391	0.98
3	9	0.00015	0.021	16.2	1.0	1	23	397	419	397	419	0.98
4	9	9.7e-07	0.00014	23.1	0.9	1	23	428	450	428	450	0.98
5	9	6.8e-05	0.0097	17.3	0.9	1	23	456	478	456	478	0.97
6	9	4.6e-05	0.0066	17.8	1.2	1	23	484	506	484	506	0.95
7	9	0.00029	0.041	15.3	4.4	1	23	512	534	512	534	0.98
8	9	0.00017	0.024	16.0	1.5	1	23	540	562	540	562	0.97
9	9	8.3e-08	1.2e-05	26.4	1.8	1	23	568	591	568	591	0.97

Sequence Information

Coding Sequence: ATGAATTCTTATACATGGGAGCGTATAACCTCcctggagaaaaaaaatttgaaactgtGTCGATTGTGCGGTAAAAATTCACAGAATTACATCGACGTACTCAATAACGAagggactgaaaaaaaattatgtctcAAAACACTTTCATGCCTTCAAATAAacatatCAGATCAGGACATTCTGCCGAAAATAATCTGCGTAAATTGTTGTGAGaaactagaaaatttttacgaattttcaaaacaagCTGCCGAAGTACAAACATATCTtagtaatatttatcaacattCTGAAAGTGAAATAAATATCGATGacaatagaataataataataaaatataatcctGTTGATATTGATCAAGAGCAACAGGGAGCAGACgttgttattaatttgaatCTCGATCAAGGAGTTGATCTCAATGATTTGAATCATGAAcaagtaaacaaattaatccaagaacaattaaataatttaaatcaactgcaattaattaataatttaaactctgaaGTTATCGACAATTTGAGTCCAGTcgagataataaataatttgcatCAAGATCAATTGATTGATAACTTAAATCCGGAGGGAATAATTAGCAatttgagtcaagaaaaattattgaataattttaatgaagacgaggaagaaataaataatttgaatgaaGAATATGAGAAGATCATAGAGCAAGTCAGTAGTGAATTTAATGATTCTGTTGGTGATAATCAGCTGAGAGGTGATAATGCTGGTGATGATAAGGAAGAAGAAGAGAGAGAAGAGGAGAAGGAAGAAGACGACGATGGAGATGAAGGCAATGAAGAAGATGAATTTGTCAAATTAGAACGGGAGGAaagattgaaaaaattgaaagaaacTAAAGTCGTTACCAGTCGACTGACGATAACTGAAGCTATCCAAGGATACCCTTGGAAATGTACACTCTGTAACTCTGGAGTGATGAAGTCTTACAAAGATTTGCAGCATCATTACAAACATAAGCATGACGAGCCGGCTGTTTTCAAATGCATTCACTGCGCGAGGGAGTACAGTCGCTACAGGAGTTTCACTAAACACTTTCTGCTGCACGAGGACCCCAAAAGATTCgaGTGCGACGATTGCGGcaaagtatttaatttaaagtcgACTCTGCTGTCGCATACGCTTGTGCACTCGGACAAACGTCCTTACTCCTGTTCCGTGTGTCGGAAGAGATTCAAAAGCGCTCTGACTTTGGCGGTCCATAAGAGACTCCATCTGCCTCAGGAGGGTCGCGACCAGTTCACCTGCGAAATCTGCAAGAAAGCcttcTCATCGAAAAAAGCGCTTGAGAATCACGAAAAGATGCACGAGGGCGTTTATGATTTCATGTGTGACGTCTGTgggaaatcatttttatcaaaaagcTCGCTGAGCTATCATTTGTCTAGTCATACTTCTGATAAAAATCATATTTGTTCCACCTGCGGTCGTGCTTTCAGAACTGAAGGCCTCCTAAaaaagCATTCGGTAACACATTCAGACATTAAAAAACATCGATGTGATACCTGTGgaaaacaatttaaagaaCGTTGTACTCTAGTCGCACATACGAGAATCCACACCGGGGAAATGCCATACGCATGCGAGCACTGCGGCAAAAAATTCCGTTTCGCTGGAATTTTAACGgtccATCGAAGACAACACACTGGAGAACGGCCGTACATTTGCACATTTTGCAAGCGCACATTCACCAACTGGGCGAATTTAAACAAACATATGAAACGTGTCCACAACACAAAAGCCGGAGTTCTgagaagaaattaa
Protein Sequence: MNSYTWERITSLEKKNLKLCRLCGKNSQNYIDVLNNEGTEKKLCLKTLSCLQINISDQDILPKIICVNCCEKLENFYEFSKQAAEVQTYLSNIYQHSESEINIDDNRIIIIKYNPVDIDQEQQGADVVINLNLDQGVDLNDLNHEQVNKLIQEQLNNLNQLQLINNLNSEVIDNLSPVEIINNLHQDQLIDNLNPEGIISNLSQEKLLNNFNEDEEEINNLNEEYEKIIEQVSSEFNDSVGDNQLRGDNAGDDKEEEEREEEKEEDDDGDEGNEEDEFVKLEREERLKKLKETKVVTSRLTITEAIQGYPWKCTLCNSGVMKSYKDLQHHYKHKHDEPAVFKCIHCAREYSRYRSFTKHFLLHEDPKRFECDDCGKVFNLKSTLLSHTLVHSDKRPYSCSVCRKRFKSALTLAVHKRLHLPQEGRDQFTCEICKKAFSSKKALENHEKMHEGVYDFMCDVCGKSFLSKSSLSYHLSSHTSDKNHICSTCGRAFRTEGLLKKHSVTHSDIKKHRCDTCGKQFKERCTLVAHTRIHTGEMPYACEHCGKKFRFAGILTVHRRQHTGERPYICTFCKRTFTNWANLNKHMKRVHNTKAGVLRRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01005503;
90% Identity: iTF_01005503;
80% Identity: -