Mmed026829.1
Basic Information
- Insect
- Microplitis mediator
- Gene Symbol
- -
- Assembly
- GCA_029852145.1
- Location
- CM056854.1:2955362-2959494[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.8 2.6e+02 3.3 1.2 3 20 225 242 223 244 0.88 2 11 0.011 1.6 10.3 1.7 1 23 250 273 250 273 0.94 3 11 2.1e-07 3e-05 25.1 1.0 2 23 312 333 311 333 0.97 4 11 0.019 2.8 9.5 0.3 1 21 338 358 338 361 0.79 5 11 0.24 34 6.1 1.9 2 23 431 452 431 452 0.97 6 11 3e-05 0.0042 18.4 2.3 1 23 461 483 461 483 0.97 7 11 2.8e-07 4e-05 24.8 0.4 1 23 491 513 491 513 0.98 8 11 0.011 1.6 10.2 1.8 1 21 519 539 519 540 0.95 9 11 0.0002 0.028 15.8 0.7 1 23 577 599 577 599 0.99 10 11 0.082 12 7.6 0.0 1 23 655 678 655 678 0.97 11 11 2.1e-06 0.0003 22.0 5.3 1 23 683 706 683 706 0.98
Sequence Information
- Coding Sequence
- atggcCCCGTTGCTGGACTGGGAGGACTCATGCCGGTTGTGTTCGGAAAATAAAACTGATATGTTTGATATATTTGGTGATGAAGGTGTCCGTAGACGAGTTGCTCAAAAGCTAAGGGTTTGCTTGCCAGTTATGGTCTACAAAAGTGACCCACTgcctaaaaaaatatgtcagtTTTGTGCTGCCAGGCTGGACGATGTCTATGAGTTCCGGGAGTACTGTCTGAATGTTTACAAGAGCAtgcattttaaattactggctaataaaaattcaaatacggTAAAGATATTCTTGGATGCTATGTCCAATTCTCCTGATCCGTGccagGTCCAGCTGTGTATGATAAAACAAAGAGCTCCGCCGCCGTTGGTTCCACTGCCAGTGAGAACACAGTCCCCAGTGGACAAAGAACTTCTAGAACCTCTAGTGGAATTGCCCTGCgaagttgaaataaaagaaGAGCCGACAGATGGGTTTGGGAAAATGGATTTTGAATCCGGAGTTGGAGACAACGAGCAAAGTTTTGTTGATATTCTGGGTTTAGTTGGAGAAAATGGATGTCATGATggagatgataaaaaaactagTATTTTAGAACGTGTGTTGAAAGGAGACTTGACTGCCAATGACTGCAAAGATGGATCACCAAAGACTAAGAACTCTCAGTGGTGTTGCTCGCCATGCAATAGTTACTACaaGACCAAAGAGAGTTTGATGAAACACGTGCAGTTTAACTGTCCCAGGAAGTATGAGTGCGGGAAatgtttgattatttttaaaagctgTGGAGAATTGACTCATCACGAAGAAGTGTACCACAGTCATAGGAATGAGATCAAAGCTGATGACCAGCAAATGAACGGCAGCTTGATGCCAGCAAACGCGGACTTGGAAGGATTTAAACGGGAGCCCAGTGATGGGATTAAAAATCTCGTCTGTCCCACATGTGgcaaaATTTGCACCCAACAAAGTGCGCTGTCGAATCATATGCGGACTCACGAGCCCAAGAAACACAAGTGTGATATTTGCGGTAGATCTTTCGGTTTATTTATAAGATTAGCTGCGCACAAACTGGGTGAACATAATCAGCAGCCTTCTATTATACCGGAAGTCAGTACGATTGAGCAAGAAGAAGCGCTCAATGATGAGAGAGAAGCGAGGAAAGCCAGGGAAGTTAAAGTCAAGGATCTTTGTCGGACTTTTTctgaaactctAGAAGACAACGAAGTGGCTGATGAGAGACCAGCAAAACGTGGCGCGTCATTGAATTCAAATGCGAAGAATGTCGCGCGGTGTGGAATTTGTCAACAATGGTTCAATGATCATACGACGATGCTTAATCATCTGCAAACACACTCggataatttaataacaaagaATTTTAATTGCAGTACttgcaaaaaaagtttcagagAAAAATGGCAATTACAGAGGCATGAGcTGTCGCATAAACGAGCAAAAGTAATTACCTACGAGTGCTCAGTCTGTAATAAATCATTTGCTGATAAATCACAGCTTGAAAGCCATGAAAAAATTCACGTTGTCGATCGCACATATCGGTGCGCGAAAtgtgacaaaattttctttaaagaaCTTTCACTTATTACTCATCAGTGCAGCGGAGTCTCCTCTTTCGGTCGAAAAAATCCGTCAATTAAATCAACCGCGACCAAGGATTCTTCGACAACTAATCCCTCCAATACACCAGCGGCGAatgaaaccaaaaaatataaatgtccCAAGTGTCCGTCGACCTTTGATACTTCGCGGTTGAGAAATTTACATATCAGGATACACATCGAGCCAAAgGTACAGGATACTGGTAGTGATGAAGTTAAACCGATGCCTAAATTGAAAGCGGAGCCGTCTGGTGTGCCGTCTTTGGTGGAGCCTAATGTTAATATTGAAGAACAAAATTATACTGTGCCATTAAAAAGAACGCTCATTAAAACTGCTGGgggatacCGGTGCGGAGTATGCAAATCTCCCTTCGTGTTGCGAGATTTAGCAGTAGCGCATTTGAGATCAGCGCATCCAGTGATGCCGTACCAGTGTCCATATTGCAAAGAACGTTTTACAACTCAGTATACATTTACGCATCATATTAAAACAAGTCATCCAAATGAAACAggataa
- Protein Sequence
- MAPLLDWEDSCRLCSENKTDMFDIFGDEGVRRRVAQKLRVCLPVMVYKSDPLPKKICQFCAARLDDVYEFREYCLNVYKSMHFKLLANKNSNTVKIFLDAMSNSPDPCQVQLCMIKQRAPPPLVPLPVRTQSPVDKELLEPLVELPCEVEIKEEPTDGFGKMDFESGVGDNEQSFVDILGLVGENGCHDGDDKKTSILERVLKGDLTANDCKDGSPKTKNSQWCCSPCNSYYKTKESLMKHVQFNCPRKYECGKCLIIFKSCGELTHHEEVYHSHRNEIKADDQQMNGSLMPANADLEGFKREPSDGIKNLVCPTCGKICTQQSALSNHMRTHEPKKHKCDICGRSFGLFIRLAAHKLGEHNQQPSIIPEVSTIEQEEALNDEREARKAREVKVKDLCRTFSETLEDNEVADERPAKRGASLNSNAKNVARCGICQQWFNDHTTMLNHLQTHSDNLITKNFNCSTCKKSFREKWQLQRHELSHKRAKVITYECSVCNKSFADKSQLESHEKIHVVDRTYRCAKCDKIFFKELSLITHQCSGVSSFGRKNPSIKSTATKDSSTTNPSNTPAANETKKYKCPKCPSTFDTSRLRNLHIRIHIEPKVQDTGSDEVKPMPKLKAEPSGVPSLVEPNVNIEEQNYTVPLKRTLIKTAGGYRCGVCKSPFVLRDLAVAHLRSAHPVMPYQCPYCKERFTTQYTFTHHIKTSHPNETG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01004553;
- 90% Identity
- iTF_01005494;
- 80% Identity
- -