Mmed010110.1
Basic Information
- Insect
- Microplitis mediator
- Gene Symbol
- -
- Assembly
- GCA_029852145.1
- Location
- CM056848.1:3802082-3813495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00012 0.017 16.5 1.6 3 23 835 856 834 856 0.98 2 14 0.0067 0.96 11.0 1.9 1 23 863 886 863 886 0.93 3 14 0.0001 0.014 16.7 0.7 1 23 892 915 892 915 0.94 4 14 0.51 73 5.0 1.3 2 23 923 943 923 943 0.95 5 14 1.1e-07 1.6e-05 26.1 2.8 2 23 949 970 948 970 0.97 6 14 2.2e-06 0.00031 22.0 0.2 1 23 976 998 976 998 0.99 7 14 0.0046 0.66 11.5 2.8 2 23 1010 1032 1009 1032 0.95 8 14 0.3 42 5.8 1.3 1 23 1038 1061 1038 1061 0.95 9 14 0.01 1.5 10.4 3.6 3 23 1084 1105 1083 1105 0.96 10 14 0.00039 0.056 14.9 0.6 2 23 1112 1134 1111 1134 0.96 11 14 4.3e-05 0.0061 17.9 1.7 2 23 1142 1163 1141 1163 0.97 12 14 0.0014 0.2 13.1 2.4 1 23 1169 1192 1169 1192 0.96 13 14 1.8 2.6e+02 3.3 3.4 2 23 1199 1220 1198 1220 0.96 14 14 0.058 8.3 8.0 2.5 1 23 1226 1248 1226 1248 0.95
Sequence Information
- Coding Sequence
- ATGCAAGAGTTAAGAAAGAAACAGCTGTCAAGAATAGATGACATCCATTTTTTAATCCAagctataaaatttcaagacGAAGATTATATAGATAATGTAACAAACGAAGATATCTGTGGATCTATTAATACTCATTACGGTAATTACGGACCTCCTCTACATCTAGCCGCGCGAGTcggaaattataaaatatttcaaaagttgataaaaatcGGTGCTGATATACACCAACGAAATTCAATAACTCAAGAAACAGTGCTAGATAGCGCCATGGAATCCTTCAATTACGATATCGTCAAGTATTTGAAAGAAAATGGTGTAGAAAAATCTGATGGCATTGAGGGAGAAACTGCATTGCCGCAATTTGCGGCCGATGAAGGAACAAGAGAAGTTATGATGTTATTAGTGACTAACAAAGCTGACATTAATGCTAAATCTGATGACGGAATCATTCTTTTTATTAATGCTGCTAAAGCTAAACAATACGGTATCATGAATGCTGTATTAATAAAGTATATACTTGATCTTTTTTGCATATATGAAGGAGATGATGACACTAAAACAATTTTCCATGCAGCTGCTGGTATTAACAACTATACAGCATTGATGAATTGGCTAATTAGGTTTTGTCGAAAGCATAATTTTCCAagaaatgacaattttttttcgtactttATATTTCAAATGGGGTATCATAACCACTACTCTCGTCTCCACATGTTAGAAAATGCTTGGCCAGAATTGTTTCCAGAAGGTATTGACGTTAATGCTGCGGATTCTATTAAGAGGCACATTGAAGAATTGATAGCAGCGGGTCTTTATGATAGTGgtatttatacatttaatgcAGTCCGAAATTCATTTTCAATGCAGTCTATCAAGGATGATATAAGTAAATGTAATGTGAGGGGCTCAGAACAAGTTTTAGACCCCAGTATTGactcgataaattatttagatcgacatcataatgaaaaaatgatcGATTTCGAAGAGAAGAATTcgtattatcaatatattgatgAATCTAGATCAAGTGTCTCTTCATCATGTGAAAGGAATTCTACAAGTGAAAGtagtgattttataaaatcaaataacCCCATAGATTTTGTAAACGTTGGAAATGATGATAATAGagatatattacaaaattacaaagtcaattttttattgaatggaaagaaactattgaaaaatattaattcgcTTGATGATTTGATGAATAAAACGTCGAGAACAATGACAACACTAGAAGAAAAACCTGTTaaacaagtaaaaaatatagatgatTTGAAGAAAGTACTCTCCAAAGTGAAGGTTGTGACAGGTGAAATCAGTAGTTGCGATGAAGTAAACAcaggtaatttttcaaataaaataccaaatgaaaataaaacacCGCTCTCAGCACATtctaaaattcaattaaaaaattattgtcgtACATGTGCTGGATTAAAAATACCTTTGGTAGATATATTCGGAGAAAAAGGTATCCAAATGAGATTAAATCAACAAATGAGACATCTAGAGCATATTAGTAAAGATGATAGTTTATCCACACAAATTTGTATGGATTGCATTTGCGATTTAAAAATGAGTTACAAGTTTTTTATGCAAATAAAAAAGGCtgaagttaaattaaaatcaattcgTACGTCTTTAAGTTCAGTGTCTGCGCGCCAAACGGACTTAAAGCcagatgaatttataaattcaaaaaagtcTCAAGAACGAGAAGAAATCATCAAGTGCCCAATGCAAGTTAATAAACGAGAATCGTCAcgaatcataattaattcgaGTGACGTAGCTGCTAATAACCACTGTGCAAACGcaatagataatttaatggaaCATGAAGAGAAAAACAAGTATAATGAAGATAATTTTACTGAAGAATTCGATCCCGATAATTCTATACCTTCAATAGAAACGTGTGATAAGTCACATTTTGACATGGAAATAGacactaatttaaataacgtgCAACAAGAAAATCATGCTGATGTGTATAGTAAAGAAACGACTTTACCaataaatgatgaattatGCCAAAAGAATGGTGAAGAATCAGAAGATATAacagataaatcaatttatcagTACAATTCAGAACTTaaaacttatataaaattagaaaCTGATAAATCAGTAGtatctaatattttaattcaatcgaATCCAGACATCCTTGAATCCGAAAATGATGCAatgttgaaacaaaaaaatttgttgaaaaaaaacatttcattaGATGCATTGAACAATACAGCAGTATCAGAGAAAGAATCAAAGATTGACCAATTGAATACCGTGATTGCACCACCAGCGAAAGAAGAAGATATAATGTATGTTACTGTAAAAGGTTCTAAACCAAATGAATTACTTTTggttaaagttaaaaaaatgcataaaaATGGCGACAGAAAAGGAGAATCAAAGGGGAAAAAACGTCAACATGAACAAAAGCACTGTGATGCTATTTATGGTCAACTATGTGACATGTGTggggaaaaatttaaacatcaAGGTACTTTAGATCAACATATTAAGACCCAACATATGagctgggaaaaaatttttcaatgtccTAAGTGTCCCAAAAAATTTgcttttaaacaaaaattaagcTTTCATGTAAAATCAGTTCATACAACATTACGAGCTTATTTATGCGAAGACTGTGGAgctgattttaaaaatccagCATCTCTAAGACATCATCGCATTCGAAAACATCAGCCTTCGAGTAATAAACGTGAGTGTCAAGTTTGTCATAAAATTGTTCCATTTTACAGTCTTTCAAAGCATATGTACACTCATAAAGCATATACAATTAAGTGTCCACATTGcgataaaatgtttaaaaattcgtCAACATTGAAACAACATCTACGAATTCATGAAGATCAACGACCATACCGTTGTGAAAATTGTGGTGCTGGGTTTAATCGACGAGATGGTTTAAGATTGCATATGCGGGTTCATCTAAAATCTAATAGTCGAGCTCTTAGAGAATGCTCTTGTCAGATATGCTCAGAAAAATTTCCTAATCATTCAATGCTCGTTATTCATCGAAATCGTGTTCATAAAGATGGTAAACAATATACGTGCCGTATATGTAATCGTTCGATGCTTTCTTCCAGATCATTAGAGTGGCATATGTCTCATATTCACAATGAAATACCACCAGGTATTTCAAGAGATCAAGTTGAACCTacgcttgaaaaaaaaagagtattATGCAATCATtgtaataaaacatttaagaCCGAAATGATTTTGAGAActcatattaaaaatacacatATGGAAAAAAATCCGGTTAAATGTTTAGACTGTGATTTAATGTTCACATCAGAAGTAAGATTGAAACACCATATGATGATTGCTCACAATCGATTTGAAGGTACACTTACTTGTCCTCATTGCCCAAAACGTTTTGTTAACCAGTTAAGGCTTAAAACTCATATGATATCACATTCAGAAGACAGACCTTACACTTGTGAAATTTgtggttttaatttaaaaacaaaaattcaattaataaaacatcATCAAAATAAACATAGTGATGAACGACCGCTTCAATGCCGATTCTGTCCCTGGAGATGTAAACAAGTTAGTGCATTGGTTTGTCATGAAAGAACGCATACGAATGAACGACCCTATTCTTGCATAGTTTGCAAACAACGTTTTAAATATCTcggagataaaaataaacaccaGAGAAGACATGAGAGTCTCGGAGGGGCAGGGTTCAAACGCATTGTTGCTGGAAGAAATATTAAACAGTCAAGAAATCATGAAGGAGAAACTTCAGGTTCAGATCAAGAACAAGTAGAACCAGAGGACGAATATGAAACTACTGTAGAGGATGAACAACAATTTGGCGAGCAAATTAGTCATGAAGGAGATCAGCAAATAATCAAGTTTGAAGCAGTAGAAGTTGATGAAGATTATGAGCAAGTTTATGAACAAGAATATGACGAAATTTCGGAAATAGCCTCTGATTCTGCTGATGTGATAATGAGTATCGAAAATACATCAGTTTATACTGAAGAAGTTTCTGCTGAAAACATTGAGCATGAAGACATAACTGATCAAATGTTACAACCTGGGACGATAGTTCATTTACGACAGAAAGatgaaaatggaaaaattcaaGTTATTCCTGTCATGTTATCTTTGCCTGATTTAACCGAATCAGGCACTGAAGTTGATTTAGCAACTGCATCAATAATGTATAATAgctaa
- Protein Sequence
- MQELRKKQLSRIDDIHFLIQAIKFQDEDYIDNVTNEDICGSINTHYGNYGPPLHLAARVGNYKIFQKLIKIGADIHQRNSITQETVLDSAMESFNYDIVKYLKENGVEKSDGIEGETALPQFAADEGTREVMMLLVTNKADINAKSDDGIILFINAAKAKQYGIMNAVLIKYILDLFCIYEGDDDTKTIFHAAAGINNYTALMNWLIRFCRKHNFPRNDNFFSYFIFQMGYHNHYSRLHMLENAWPELFPEGIDVNAADSIKRHIEELIAAGLYDSGIYTFNAVRNSFSMQSIKDDISKCNVRGSEQVLDPSIDSINYLDRHHNEKMIDFEEKNSYYQYIDESRSSVSSSCERNSTSESSDFIKSNNPIDFVNVGNDDNRDILQNYKVNFLLNGKKLLKNINSLDDLMNKTSRTMTTLEEKPVKQVKNIDDLKKVLSKVKVVTGEISSCDEVNTGNFSNKIPNENKTPLSAHSKIQLKNYCRTCAGLKIPLVDIFGEKGIQMRLNQQMRHLEHISKDDSLSTQICMDCICDLKMSYKFFMQIKKAEVKLKSIRTSLSSVSARQTDLKPDEFINSKKSQEREEIIKCPMQVNKRESSRIIINSSDVAANNHCANAIDNLMEHEEKNKYNEDNFTEEFDPDNSIPSIETCDKSHFDMEIDTNLNNVQQENHADVYSKETTLPINDELCQKNGEESEDITDKSIYQYNSELKTYIKLETDKSVVSNILIQSNPDILESENDAMLKQKNLLKKNISLDALNNTAVSEKESKIDQLNTVIAPPAKEEDIMYVTVKGSKPNELLLVKVKKMHKNGDRKGESKGKKRQHEQKHCDAIYGQLCDMCGEKFKHQGTLDQHIKTQHMSWEKIFQCPKCPKKFAFKQKLSFHVKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPSSNKRECQVCHKIVPFYSLSKHMYTHKAYTIKCPHCDKMFKNSSTLKQHLRIHEDQRPYRCENCGAGFNRRDGLRLHMRVHLKSNSRALRECSCQICSEKFPNHSMLVIHRNRVHKDGKQYTCRICNRSMLSSRSLEWHMSHIHNEIPPGISRDQVEPTLEKKRVLCNHCNKTFKTEMILRTHIKNTHMEKNPVKCLDCDLMFTSEVRLKHHMMIAHNRFEGTLTCPHCPKRFVNQLRLKTHMISHSEDRPYTCEICGFNLKTKIQLIKHHQNKHSDERPLQCRFCPWRCKQVSALVCHERTHTNERPYSCIVCKQRFKYLGDKNKHQRRHESLGGAGFKRIVAGRNIKQSRNHEGETSGSDQEQVEPEDEYETTVEDEQQFGEQISHEGDQQIIKFEAVEVDEDYEQVYEQEYDEISEIASDSADVIMSIENTSVYTEEVSAENIEHEDITDQMLQPGTIVHLRQKDENGKIQVIPVMLSLPDLTESGTEVDLATASIMYNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -