Mmed017278.1
Basic Information
- Insect
- Microplitis mediator
- Gene Symbol
- -
- Assembly
- GCA_029852145.1
- Location
- CM056850.1:21955204-21961976[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6e-05 0.0086 17.4 1.5 1 21 30 50 30 51 0.96 2 10 3.5e-05 0.0051 18.1 0.8 1 20 92 111 92 113 0.94 3 10 0.00017 0.024 16.0 0.2 1 21 167 187 167 188 0.96 4 10 0.0013 0.19 13.2 3.6 2 21 197 216 197 217 0.94 5 10 4.7e-05 0.0068 17.8 4.1 1 21 281 301 281 302 0.94 6 10 0.0087 1.2 10.6 1.5 2 21 340 359 339 360 0.94 7 10 4.9e-05 0.007 17.7 0.4 1 20 370 389 370 391 0.96 8 10 0.018 2.6 9.6 2.2 1 21 437 457 437 458 0.94 9 10 2.8e-05 0.004 18.5 1.1 1 21 515 535 515 536 0.93 10 10 8.6e-07 0.00012 23.2 1.3 1 21 558 578 558 579 0.96
Sequence Information
- Coding Sequence
- ATGACTCACATTAGAGTAGAATGTGCGCGGAGGGTAGCTGTGAGGAAGTTCAAGACTTCTAGTCCTCGTGTTCTTAAGCCAGTGATATTTAAATGCTCGAGATGCGGCAAAGATTATCAGAGACAAACTTCGCTAAGAAGACATTTGAAACTTGAGTGTGGAGTGGAACCTAAACAAATTTATTTCTTCTGGAACACGATGGACAGTTACGAGGGAACATCCGCCGAAGACAAATCGTCTGAaagctctaatttttacaacCCAACTTATAAGTTTATCTGCCCGAGATGTGGGAAAACTTACAAAAGCGCGGGATCGCTGTCGCGGCACAGACACTATGAGTGCGGAATAGAACCCAAGGAAAAGTATATCGAGGAATTATTGGAGGTTTCGCACTCATCCTCAGACGGGGAAGATTATTATCCACAAAATCTTCTTGGTGTCGCGTACAAAACTTCGGTTAATGAATCAAAAGAAGTACGAGATCGCGATGGAAAATATGTCTGTACAAAATGTGGCAAATCTTATATCGCTGCGACATCTCTGAGTCGGCACAAACGTCTCGAGTGTGGCGTCGATCCATCTGAGAAATGTCACATTTGTAACAGACGATTCAGACACAAATTTGTTCTTACTGCTCATAGACAAAATTcCTTTAGAATTGATGCGGTCTGGAGTATGAACCATCAAATATTCATATCATCGGATCGGGGAATAGAGCAAATCAATCAAATGACTGCCGGAAATCAGTCAGCTTCAATGATACCGGTCCATAGTTACGAAACACGTAACGTGAAGAAACGAACCGCCAGTGGTTCAAATGTGCTGTCTATTATGCCTCACGTTTGCGAAAAATGTAACAAAGGATTTCGGCACCGCAGTCACATGCGACGTCATCAACTTCTGTGCGGAAATGCACTGAGACCTTACTCTTtatacaATTTGGACCCATTTGCTGTAAGTTATGCGACGACATCTCAATGGTTTGACACTCCAatgatgaatgaaaaaaatttgacgtgtCACTtgtgccaaaaaaattttctgtcacaGAAAACTCTGCTGAAACATATTAACTCGATGTGCGGTACCAGTAACACTCAAACATATGAATGTGAAAAATGCGGTAAATTATTTGGCAGGCGCGATAATATGAAACGTCATTATGATTTGTGTGGAActtcaACGTTCACTGACTGGAGTATAAAGAAAGAGAATGTGGAAGACGAATATTCGAGCGAGCTGGGAAATCAGTCAAATAGTTTGGAGAAAAAGCGGCGCGGCCGGAAGTGCAAATTGAGcttgaattttatttgcaatGCATGTGGCAATAAATACGCGCGATTAAGTTGTTTGCGGCGGCATCACAAAGAGTGCTTTCAAGAACCGACACTCCAGTatccTAAAAAATACAGAAGACAAAGAATTAACGAGATGAACTACTTCGTGTACCCGGAGTTGAATTACCAGAGCGAGGATATCGAGATGCTGCAGGGCAATGACGCGATAAGTATTCTGAGGAGGGACCAGAAGCTAAGACTGCACTTTTGCAGCGGGTGCGGAAGATCTTACACGAGAGTGGACAGTTTGAAGCGACACCAGCTCAAGTGCACCGAGTACTTGACCAGTTCGTTGCAGGACAACGGGCCCGGGCGCAACGACGACCAGGAATATTTTTGCGAGAACTGCGGGAAGAGTTACAGAAGACGGGACACTTTGCAGAGACACCAGAGACTCGTTTGCTATCGCGACAGAGTGTTCGGTGATAAAAAAAGATGA
- Protein Sequence
- MTHIRVECARRVAVRKFKTSSPRVLKPVIFKCSRCGKDYQRQTSLRRHLKLECGVEPKQIYFFWNTMDSYEGTSAEDKSSESSNFYNPTYKFICPRCGKTYKSAGSLSRHRHYECGIEPKEKYIEELLEVSHSSSDGEDYYPQNLLGVAYKTSVNESKEVRDRDGKYVCTKCGKSYIAATSLSRHKRLECGVDPSEKCHICNRRFRHKFVLTAHRQNSFRIDAVWSMNHQIFISSDRGIEQINQMTAGNQSASMIPVHSYETRNVKKRTASGSNVLSIMPHVCEKCNKGFRHRSHMRRHQLLCGNALRPYSLYNLDPFAVSYATTSQWFDTPMMNEKNLTCHLCQKNFLSQKTLLKHINSMCGTSNTQTYECEKCGKLFGRRDNMKRHYDLCGTSTFTDWSIKKENVEDEYSSELGNQSNSLEKKRRGRKCKLSLNFICNACGNKYARLSCLRRHHKECFQEPTLQYPKKYRRQRINEMNYFVYPELNYQSEDIEMLQGNDAISILRRDQKLRLHFCSGCGRSYTRVDSLKRHQLKCTEYLTSSLQDNGPGRNDDQEYFCENCGKSYRRRDTLQRHQRLVCYRDRVFGDKKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01004574;
- 90% Identity
- -
- 80% Identity
- -