Basic Information

Insect: Microplitis mediator
Gene Symbol: -
Assembly: GCA_029852145.1
Location: CM056847.1:24794890-24802354[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.16 22 6.7 0.6 6 21 12 27 6 28 0.85

2 14 0.19 27 6.4 0.0 2 20 34 52 33 54 0.92

3 14 1.7 2.4e+02 3.4 0.3 1 12 250 261 250 270 0.87

4 14 0.077 11 7.6 0.9 1 19 382 400 382 400 0.98

5 14 5.7e-05 0.0081 17.5 0.1 2 23 408 429 407 429 0.98

6 14 0.00017 0.025 16.0 2.2 1 23 440 462 440 462 0.98

7 14 0.066 9.4 7.9 0.3 1 23 481 502 481 502 0.91

8 14 0.0018 0.25 12.8 0.0 2 23 508 529 508 529 0.95

9 14 5e-05 0.0072 17.7 4.8 1 23 573 595 573 595 0.99

10 14 3.2e-06 0.00046 21.4 4.3 1 23 601 623 601 623 0.98

11 14 0.011 1.6 10.3 8.4 1 23 629 651 629 651 0.98

12 14 1.5e-06 0.00022 22.4 0.8 1 23 657 679 657 679 0.98

13 14 9.7e-05 0.014 16.8 0.2 1 23 683 705 683 705 0.99

14 14 2.3e-05 0.0034 18.7 0.4 1 23 713 735 713 735 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.16	22	6.7	0.6	6	21	12	27	6	28	0.85
2	14	0.19	27	6.4	0.0	2	20	34	52	33	54	0.92
3	14	1.7	2.4e+02	3.4	0.3	1	12	250	261	250	270	0.87
4	14	0.077	11	7.6	0.9	1	19	382	400	382	400	0.98
5	14	5.7e-05	0.0081	17.5	0.1	2	23	408	429	407	429	0.98
6	14	0.00017	0.025	16.0	2.2	1	23	440	462	440	462	0.98
7	14	0.066	9.4	7.9	0.3	1	23	481	502	481	502	0.91
8	14	0.0018	0.25	12.8	0.0	2	23	508	529	508	529	0.95
9	14	5e-05	0.0072	17.7	4.8	1	23	573	595	573	595	0.99
10	14	3.2e-06	0.00046	21.4	4.3	1	23	601	623	601	623	0.98
11	14	0.011	1.6	10.3	8.4	1	23	629	651	629	651	0.98
12	14	1.5e-06	0.00022	22.4	0.8	1	23	657	679	657	679	0.98
13	14	9.7e-05	0.014	16.8	0.2	1	23	683	705	683	705	0.99
14	14	2.3e-05	0.0034	18.7	0.4	1	23	713	735	713	735	0.98

Sequence Information

Coding Sequence: atggGATCATCAGTAATCATGTGCCCGATGTGCTGCAATGAGAGTTTCAATAATTTGCGGTCATTGAAATATCATTTGTTGAGTATGACTGATAATTTGTACTGTCCCGGATGTTCCTTGAGGTCGGATTCTGTTGATGATCTTATCAGACATCTAGATAAATGCGGtaacgatgatgatgatgatgatcatgaccatgatcacgaTCATAGTAATAGACCGAGTAATGACAATaatgatgatggtgatgagGTTGAATCTCCAACGGagtctaataattataaagacactgaaattttaatggacCCAAATGTTgaagaaataacttttttaaaccAAGTTAACAATCAAGAAATGGTAATAAGCGACCCCCGGACTTTGGAAGTCGACGAAaacggtGATGTTAAAATAATAGAGTCTCTAGACAAGCCACTGAAACGTGACATCGACTCGCCAAAAGCCATAAGTACATCAGACATAGAACACGATGATCCGGATAAAGATCCAGCAGAGTCAGAAGACTCACCAGTAATTCGAATCCCTGAAGGACTCAATCGAAATGATAATGAGAATGATGAAAATGTTCTCGCTGTTTTACCAGAAGACTCAGCAGAGTTTTTGGACACCGATCAGAACTTGATGGAGATACAGCACCAAGATGGTGAATTAAATGAGCAAGAGTTGATGAAAGTTAAACAAGAAATCTGCGAGgtaaaagaagaagaagagatcGACTCGACGACTGTCTATAATTGCAGCAGCTGTGGCGTGAGTTTCAACTCAGTGATAGACCACATAAAAGAATACCACGAGGGCCAGGATGTTATTGTCGAAGTAAACGGAGACATGACTCAGACAGAAGATTTTCCAGCAGAAGAAACGACCGAGAATACAAAACAGGGTCTAGGTACTCGCGGTCAGCGTCAGAAAATGAACACCCTCAGAACTGAGGAGTGCGTAGACAGCGAGGGCCGCAGGTACACGAGAAAAGTCGTCCAGATCGAAAGATTCTGGGACAAAAAAGACAAGTCAATGACTTCTGCAAAGATGattgagaaatttttcgcCAACCCTGAAAATGAACCGAAACCTCTCACTCTgtccaccagcaagaccaggAAGAACGAGGTGCCCCAGAGAATGTACCGGTGTAATCAATGCCTCGAGCAGTTTTCGAAGCTAGGGGAGTTTCGTAACCACCCCTGCTGCAATGGCTCGAATCAGTGCGACAACTGCGACCAGGCATTCGCGACAGTCAAAGCCTTGCAGCTCCATATGAAAGTCCACGGGCCTGATGCCTCGCCGACGAAGAAGAGTTTCGTCTGCAGGATTTGCGGGACCCAGTTCGCCTCGCACAAGAGTCTGAGGTTGCACTCACGGATGCACGCGCCCGTCAGAACGAGACATGTCGATGCTCCGGAGGGTAAACCCACTGCCAGCTTTACCTGCCTCGAATGCGgtaAAACACTCTCAGTATCGTATCGCGAGGCTCACATGTCACTCCATGCTGGGGACACGGCGACTTGCGGTATCTGCAATAGGAAATTCGACTCCGCGGAAAGCTTAGCGATGCACGCTGCCGTACACCCGGAACTGGGTGTTGCCCAGGTGTCTAGTGGCCAGCAAACAACTGAGCCTTCATCGCCGACTTCGAACACATCAGCGTCGACGACAGCAACCGCTGGGGTTGATAATGACTTCGACTTATCTAAACCGTACCAGTGTCAACATTGCGGTAGAAGATTCACGCGTCCTCATGAAAAAGTTAAACACGAGCGAATACACACTGGTGAAAAACCACATGTTTGTGAAgtTTGCGGCAAAAAGTTCCGCGTGTCGTACTGCCTAACTCTGCACATGCGAACACACACAGGAGTCCGTCCTTATCATTGCCAGCACTGCAATAAAAGATTTAAAGCATCATCGGTCTACAATCATCACTTGCTGACCCACGGCGAGGAGCGCGCGTACACGTGTCCCTACTGTCCGAAAACATTCAAAACCCGGGTCCAACTTGCCGGGCACAAAAACAGTCACACGAAACCCTTCCGCTGCACCGAATGCTCCCGACCATTTGCGTCTCTCTACGCGGCCCGCGCTCACATTCAAACTCACAAGAAggacaataatttgaaattcacCTGCCACATCTGCGGAGCTTCTTACGGACGTGCCTTTGCATTGAAGGATCACCTGAAGGTTCACTCATCTGAGGCAGACCCGATCCTGCCACCGGAACCAGCTCGCGAGGAAGAAGTCCACGAAGATTTTCTTATCAACGAAGAGGAAATGCTCGAGGAAATGTTagatacttaa
Protein Sequence: MGSSVIMCPMCCNESFNNLRSLKYHLLSMTDNLYCPGCSLRSDSVDDLIRHLDKCGNDDDDDDHDHDHDHSNRPSNDNNDDGDEVESPTESNNYKDTEILMDPNVEEITFLNQVNNQEMVISDPRTLEVDENGDVKIIESLDKPLKRDIDSPKAISTSDIEHDDPDKDPAESEDSPVIRIPEGLNRNDNENDENVLAVLPEDSAEFLDTDQNLMEIQHQDGELNEQELMKVKQEICEVKEEEEIDSTTVYNCSSCGVSFNSVIDHIKEYHEGQDVIVEVNGDMTQTEDFPAEETTENTKQGLGTRGQRQKMNTLRTEECVDSEGRRYTRKVVQIERFWDKKDKSMTSAKMIEKFFANPENEPKPLTLSTSKTRKNEVPQRMYRCNQCLEQFSKLGEFRNHPCCNGSNQCDNCDQAFATVKALQLHMKVHGPDASPTKKSFVCRICGTQFASHKSLRLHSRMHAPVRTRHVDAPEGKPTASFTCLECGKTLSVSYREAHMSLHAGDTATCGICNRKFDSAESLAMHAAVHPELGVAQVSSGQQTTEPSSPTSNTSASTTATAGVDNDFDLSKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHVCEVCGKKFRVSYCLTLHMRTHTGVRPYHCQHCNKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFTCHICGASYGRAFALKDHLKVHSSEADPILPPEPAREEEVHEDFLINEEEMLEEMLDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01005477;
90% Identity: iTF_01004532;
80% Identity: -