Mmed003606.2
Basic Information
- Insect
- Microplitis mediator
- Gene Symbol
- -
- Assembly
- GCA_029852145.1
- Location
- CM056846.1:3621979-3625404[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.8 2.5e+02 3.4 4.2 1 23 8 30 6 30 0.93 2 12 4.4e-05 0.0063 17.8 1.1 1 23 67 90 67 90 0.98 3 12 7.7e-06 0.0011 20.2 0.7 2 23 97 118 96 118 0.97 4 12 8.7e-06 0.0012 20.1 4.6 2 23 125 146 124 146 0.96 5 12 6e-07 8.5e-05 23.7 0.3 1 23 152 174 152 174 0.97 6 12 0.23 33 6.2 2.6 1 23 204 226 204 226 0.97 7 12 2e-07 2.8e-05 25.2 0.6 1 23 562 584 562 584 0.95 8 12 5.1e-05 0.0072 17.7 0.2 1 23 591 614 591 614 0.94 9 12 2e-05 0.0029 18.9 0.1 1 23 622 645 622 645 0.97 10 12 2.9e-07 4.2e-05 24.7 3.0 1 23 651 673 651 673 0.99 11 12 6.5e-05 0.0093 17.3 6.1 1 23 679 701 679 701 0.98 12 12 1.9e-06 0.00027 22.1 2.1 1 23 707 729 707 730 0.96
Sequence Information
- Coding Sequence
- atgcaaaataatatatgtaattttacttgcattgaatgtaaaaataattataacaatgagcatgattatttaaatcacaTGCAATTACATTGGGGAGAAGTTTGGAAATGTTTACAGTGCGATGACAAATGTACGTTATTCAGATCACAACTGTCATTAAAAGAACACGAGGGCTTGTATCATGGTCCAGATAAACCATTCAAATGTTTTAAATGTAAGTTGGTGTTTGACCGAGCATCCCAGCTTGATTATCATATCAGGAGTGTTCATTTGGGGGAAAAGTCTCAAACCTGTCAGCTCTGCGGCAAAGGATTTTTTCGCAAAGCTGATTTGAAAACGCATTTGAATGTTCATCTTGGCACCAATCAATGTATTTGCGAATTTTGTGGACGTAAATTCAACCACATTTCTAATTTAATTCGTCATCTAAGGACTCATGAAGGAGTAAAACCATATCCATGTTCTATTTGTGGTAAAAGATTCACTCAAGTTAGTTCGTTAGCAAgacataaattaattcatcaaAGAACTAATGAAGATGAAACTGATGACCATGACGATagtattaataaaaacaaattaattaaacaaaagccAATAAAACGTAATCATTATTGCAAAACATGTGGCGATAGTTTTCAATTGATGACTCTATTGAAAGAACATGAAAAAACTCATAATCAAATAGAAcccattaaaaattatcagGTTTTACAAGGATCAGAAATTCTAGATCAGCAtaactataaattaaatttacaaaatcacTGTGATATTGATAGGAATAAAAATGCGAATATAAATaccgataattttttggaacgtATTGATACAGTTCGTGATGAAAGTATTGATATTTCAGACATATTGAATCCTTATTGCAGCGAATTAGAATTACCAGCAACAGATTTAATGGAACGTGAAAACGTTGATACTGAaatgactaaaaaatttacaaacttAGATATATCGACAAGAGAAAtacgtaataataatattaatataaataatatgaatacGTGTGTTCATATTGAGAGAAATCagttttttattgaagtaTGCGAGtcagattatttaaataatttagggCTTAACTCAATGGAGTTATCggataacaataattttaataatataaattactgtGCTGATAAATCGTACACTCAGTCAATAGCAATTGCTGATAAGGATCTAAATGATCAGTGGGATCTACAATCGCAAGTGCGCAATGACTTTATTGGATTTAATCACCAGAATGATTTGACTGCAGTTGAATTGAAGGGTAACGCAATCGATAATGAAGCCATTGATTCAACAGTTAATTCAGTATTTGATCACTTGAAAGACAcgagtattaatttattggaaaatttacaattacaGCCGATAGATCAAAATTCTGATTCTCTTTGTGGCTCGGATGGTCTCGATGCTGGTTTCCATAATGAAGAAACACAGACGCAAACGCAAACGCCGATGGTACGTTTGGTACAAAATGAAGAGGGAgaacaattttttgaactaGTACGCGATACAGTAGATTTTGAAAGTCATGGACATAATTTACacattgaaaatgaaaatgtgCTTTCGGTAGCAACGAATGGCCCAGTGAGTTCGTCGGTTATTGGGAACGTCCGCAAAAGACGAGATAAACTACGACCGcgtgataaaattaaaaaaaaattcaaatgctctgtttgtaataaatcgttttcgacggcttcaaatttaaaacagCATGCGGGCGTGCATTTTTCggatcaacaaaaatttcagtGCAAAGAGTGTGGAATTTCTTTTGCCTGGAAGTCGACGCTGAATAAACATATTGCTGGTAATCATCGACCTGATGGACCATTAAAATTCGTCTGCGAGATTTGTCCTAAAGTTTATAGCACTTTGTCGCAAGTTAACGAGCATGTGAAAAGAGATCATTTGAAGGAGCGTAATTTCACTTGTTCGGAGTGCGGGAAatcgtttttcaaaaaatttgatttaaagtCTCATATACGAACGCACACGAATGAACGGCCGTATGCTTGTAAAACTTGCGGTAAAAGTTTTCATCACCAGAGCCACATTATTCGTCACGAACGTGTGCACTCGGGCGAAAGGCCGTACACGTGTGACATTTGTCGGAAGAGTTTCACTCAACCTGGGTCACTGAAAGCTCACAATCAACGACATCATTTAACTAAAGTTGACATCCTTGATTACCAAATTGATGAAGATGATCCACTGGCTCTAAATGTGGCTtag
- Protein Sequence
- MQNNICNFTCIECKNNYNNEHDYLNHMQLHWGEVWKCLQCDDKCTLFRSQLSLKEHEGLYHGPDKPFKCFKCKLVFDRASQLDYHIRSVHLGEKSQTCQLCGKGFFRKADLKTHLNVHLGTNQCICEFCGRKFNHISNLIRHLRTHEGVKPYPCSICGKRFTQVSSLARHKLIHQRTNEDETDDHDDSINKNKLIKQKPIKRNHYCKTCGDSFQLMTLLKEHEKTHNQIEPIKNYQVLQGSEILDQHNYKLNLQNHCDIDRNKNANINTDNFLERIDTVRDESIDISDILNPYCSELELPATDLMERENVDTEMTKKFTNLDISTREIRNNNININNMNTCVHIERNQFFIEVCESDYLNNLGLNSMELSDNNNFNNINYCADKSYTQSIAIADKDLNDQWDLQSQVRNDFIGFNHQNDLTAVELKGNAIDNEAIDSTVNSVFDHLKDTSINLLENLQLQPIDQNSDSLCGSDGLDAGFHNEETQTQTQTPMVRLVQNEEGEQFFELVRDTVDFESHGHNLHIENENVLSVATNGPVSSSVIGNVRKRRDKLRPRDKIKKKFKCSVCNKSFSTASNLKQHAGVHFSDQQKFQCKECGISFAWKSTLNKHIAGNHRPDGPLKFVCEICPKVYSTLSQVNEHVKRDHLKERNFTCSECGKSFFKKFDLKSHIRTHTNERPYACKTCGKSFHHQSHIIRHERVHSGERPYTCDICRKSFTQPGSLKAHNQRHHLTKVDILDYQIDEDDPLALNVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01004522;
- 90% Identity
- iTF_01004522;
- 80% Identity
- -