Mmed017570.1
Basic Information
- Insect
- Microplitis mediator
- Gene Symbol
- -
- Assembly
- GCA_029852145.1
- Location
- CM056851.1:114269-115888[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.1 14 7.3 0.7 2 23 101 122 100 122 0.97 2 12 0.41 59 5.3 1.5 1 23 142 164 142 164 0.96 3 12 4.6e-06 0.00066 20.9 0.2 2 23 199 220 198 220 0.97 4 12 0.00074 0.11 14.0 0.9 1 23 242 264 242 264 0.98 5 12 5.3e-06 0.00075 20.8 1.5 1 23 270 292 270 292 0.95 6 12 3e-05 0.0043 18.4 0.6 1 23 298 320 298 320 0.98 7 12 3e-06 0.00042 21.5 5.4 1 23 326 348 326 348 0.98 8 12 6.6e-08 9.4e-06 26.7 0.6 1 23 353 375 353 375 0.97 9 12 8.6e-05 0.012 16.9 0.3 1 23 381 403 381 403 0.97 10 12 1.7e-06 0.00025 22.3 3.6 1 23 409 431 409 431 0.96 11 12 2.1e-05 0.003 18.8 0.1 1 23 437 459 437 459 0.98 12 12 3.6e-05 0.0051 18.1 0.1 1 23 465 487 465 487 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAATATGCACTGGACCATTTGATAAAGTATTTCTACCGATAGAGAGTCAAGAAGTCGTCGATTTTACTGATGAAATGgtAAAAGTCGGTTTAGAAAATCAAAATCACAATTGGGTCGGacaaataacaacaacaaattcaaattctctGTACGATCGCACATCGATTCGCCCACATTTTATGCACTTGGACGAGAATCCTGAAGAACAAGAttcggaaaaattaaaaaattcaaaggctAAACACGAGGATGATCCACTAGTTAGATCACAAACGccaaaattttacaaagttcAATGTACACTTTGCAAAAAATGGTTCCTCAACAACGActcaatgataaatcatttgcGTAACCATTGCACCTCCTCTACCACCTTATATTCATCttcatcctcatcctcatcaGCAGGTAAACATTACTGTCTTTCATGCCAACAATTATTTTCCGATGACTTAACTTATCAAGCGCATATTCAGTCTCACAtaaacactgaaaaaaataaagatgatTCTTCAAATTCTTCATACTCGGAagataataaatcaaaaattaaaaacattgaaaaattaccAGACAAATCTTTAAAATGTGatatttgtaatattaattataaagatAAATCGAGTTTAAATGTTCATATCGCAACTCAtgttagtaataataataataacaataataataatagtaataataataataatgtagataaattatttaaatgtcagTTGTGTCTTCGTAAATTTGGCGTGAAAACAGCATTAAGTAATCACATGCTGTCACACAGTGGTGAGAAACCCCATGCATGTAGTATCTGTGAAAAAAGCTATAAAAGAAAATCAGAATTAGTACGTCATTCAATGGTACACACTGGTGAACGTCCTTATGAATGTAAAGAATGTTTGATGACATTTCGTGAAAAAgctaaattaaattctcatatGTTGGTACATACAGGTGAAAAACCATTTGAATGTCACATTTGTCACAAAGCCTGTGCAAGAAAATCCGATTTAAATAGTCACATGTTGTCACACACTGGTGGCCAATATGACTGCAAAGTgtgtgataaaatatttacacgtAAATCAGATCTCAATCGGCATGTACTGATTCATACGGGCGAAAAACCTTTTGCATGTGATATGTGTGATATGGCATTTCGTGAAAAAACACGATTAAATTCACACATGCTTGTACACactgatgataaaaaacaCAATTGTCACATTTGCGGcaaaggattcaaaaaaaaagccagcttaaaaaaacatttgataATACACATGGGTGATAAACATTATGAGTGTTGGATCTGTAAAAAggcttttattgaaaaaactacacttaatttacatattttagtACATGAAACCGATAAATTATACGAGTGTGCCAATTGTCCGACAAGTTTTAAGAGTGAAGGAGCATTGAAGAGACACTGGGTAGTACACACtaaagatgatgatgatgatgaagaacAAGAAGAAGAGGATGAAGAGGATGTTCAAGACCAAGTTTATACGTAG
- Protein Sequence
- MDEICTGPFDKVFLPIESQEVVDFTDEMVKVGLENQNHNWVGQITTTNSNSLYDRTSIRPHFMHLDENPEEQDSEKLKNSKAKHEDDPLVRSQTPKFYKVQCTLCKKWFLNNDSMINHLRNHCTSSTTLYSSSSSSSSAGKHYCLSCQQLFSDDLTYQAHIQSHINTEKNKDDSSNSSYSEDNKSKIKNIEKLPDKSLKCDICNINYKDKSSLNVHIATHVSNNNNNNNNNSNNNNNVDKLFKCQLCLRKFGVKTALSNHMLSHSGEKPHACSICEKSYKRKSELVRHSMVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPFECHICHKACARKSDLNSHMLSHTGGQYDCKVCDKIFTRKSDLNRHVLIHTGEKPFACDMCDMAFREKTRLNSHMLVHTDDKKHNCHICGKGFKKKASLKKHLIIHMGDKHYECWICKKAFIEKTTLNLHILVHETDKLYECANCPTSFKSEGALKRHWVVHTKDDDDDEEQEEEDEEDVQDQVYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01004523;
- 90% Identity
- iTF_01004523;
- 80% Identity
- -