Mmed008574.1
Basic Information
- Insect
- Microplitis mediator
- Gene Symbol
- -
- Assembly
- GCA_029852145.1
- Location
- CM056847.1:17715134-17715529[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.2e-13 8.8e-10 39.1 0.2 5 38 19 52 18 54 0.95
Sequence Information
- Coding Sequence
- ATGATgcgaaattataaaaaagaatGTGGACATCAAAAATGGAATCAACTGTCCATGGCGAAAGCTATTACTGAAGTTGTAAACGGTAATTTAGGTGTCAAAGCTGCTGCTAAAGCTTACAACGTTCCACGGTCAACTCTACaacgaagaataaaaatttacaaaattaattctaaCTTAGAATCTAGTACCGAAAAACGTTTAGGAAGATATGAGACTGTCTTTAGTCCGAAACAAGAGGAAGATTTGgtgaaatatttgaaagagCAGGAAAAGCGGCTGGCTGGTTTAACTACCAAATGA
- Protein Sequence
- MMRNYKKECGHQKWNQLSMAKAITEVVNGNLGVKAAAKAYNVPRSTLQRRIKIYKINSNLESSTEKRLGRYETVFSPKQEEDLVKYLKEQEKRLAGLTTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -