Basic Information

Gene Symbol
stc
Assembly
GCA_030273425.1
Location
CP092722.1:2033323-2037196[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 3.9e+04 -4.3 1.6 15 19 475 479 474 479 0.81
2 14 0.15 3e+03 -0.6 0.4 4 10 508 514 507 516 0.94
3 14 2e-05 0.39 11.9 14.0 3 18 524 539 510 540 0.87
4 14 7.9e-07 0.015 16.4 15.5 1 18 576 593 576 594 0.92
5 14 2.4e-07 0.0048 18.0 12.7 1 19 632 650 632 650 0.99
6 14 0.71 1.4e+04 -2.7 0.6 5 10 679 684 679 684 0.95
7 14 2.8e-05 0.56 11.4 13.2 4 18 697 711 690 712 0.86
8 14 1.3 2.5e+04 -3.5 2.2 5 10 741 746 741 746 0.93
9 14 0.0044 86 4.4 11.6 1 11 752 762 752 774 0.88
10 14 5.3e-10 1.1e-05 26.5 13.5 1 18 779 796 779 797 0.97
11 14 0.38 7.5e+03 -1.8 0.5 5 10 825 830 824 831 0.92
12 14 2 3.9e+04 -6.4 10.8 1 19 836 854 834 854 0.74
13 14 1.3e-07 0.0025 18.9 12.2 1 16 890 905 890 916 0.87
14 14 9e-06 0.18 13.0 14.8 1 18 922 942 922 943 0.86

Sequence Information

Coding Sequence
ATGGCCACCTGGGACGGTTCCTACTCAGGGGATCCTACGCACGAAGACAGTAAATTGTATTACTACTATTCAAATTCTCAAAATCCTTCTGATGATCGTCAATGGAATCATTACACCAGTAATGATAATCAATTATCCGCAACTAGTTACACTGATAATACTTCAACATTTAATCAAACCAACAAAACTTACTATGATTTACCATCAAGTTCAGTAGCCGATAATTCAAACTGTtatttcgaaaataatcgtaAGCAACAATCATCATTTCGCCATAAAACTGACGGGTCATTTAAAAACAACGACTACAATATTGTGCGGCAATCAAATTTACATCCAGGCGCCAATGAATTCATTCCGTCAAATGCTAGTTCATCAGCAGAatcatcgaaaattttttttcccgacaATAGAAGCAAGCAGCAGCAATATGGCAACCgtaaatacgataaaaaaaataattaccgtCAACAGGACACAGACTATCCCCAAAATTCATACAAAGGTTACGataaatacagaaaaaaaaatgtaactaataataatagtaatgcaTCTTATAGTCATTACAGTAATGATTATGAATCGCACAAAGATTATCCAGATGACAGCTATGAAAACACTCACTTgagtaatgaaattaaaactaGAGATAAGGACAAGGACAAGGATACCGGGTTATCATCCAGAGCACCATACAATGGACGAAGACCTAGAAGTCATGGCAgatataattcaaattcaaattcaaattctgaTTATAAGAATAATGGCAACAATTCAGCAAGACTtgggaaaaatataaatcacagtaatagtaataattgtaTTGATGAAAATAGTAAACAGCCTGTAAGCAGAGATCCTCGTGATGAAAGATACTATCGTGGATTTAATAACGACAATAATTTAGATGATGATAAACAAGCAGCGCCTAGTACTACTAAAAAAGACAAGAAGCCGgtgaaaaataacaataaagaaTTTTACGGCGACGATTTAAGAGATGATAGATATCGAAGTGCTGGCAGTGGCAACAGACGAGACGATTAttacgaagaaaaaaattatcgagaTAAACCGAATTATTACTATCGGGGTTATCGTGATAATTATGAGCGTGATGTTAAGTCTGATAATAAACAGCAgataaaagaagaaaatattaTAAATTggcggcaaaaaaaaaatagtcaagttaaaaaagtaaacaataaaaaaggaCTAGAAATAGACGATGCTGCGACACAAAAAGAGTCTTTGACTGAACAATTGAACAGAGGTAAACTTGAATGCTTAGTTTGCTGTGAATACATCAGGCAAAATGATCCAATATGGTCTTGTAATAATTGCTACCATGTGTTACATTTGAAATGCATTAAAAAATGGGCGGAATCATCACAGAGTGAGAGCGGGTGGCGATGTCCAGCCTGCCAGAATATAAATCTCGCTATTCCTGATgaatattattgtttttgtGGTAAAACGAAGGATCCAGAATGGAATAGACGTGACATTGCACACTCATGTGGTGAAATATGCGGTCGGACACGGGCTAAAAATAATTGCATCCATAAATGTACGTTACTTTGTCATCCAGGATCATGCCCACTGTGTTTGACGATGGTAAGACGTTTTTGCGGTTGTGGTAAAAcgtataaaagtttaaaatgtAGTACTGATACTCAATTGTCTTGTTCAAATATttgtgataaattattaaattgtaaacagcataaatgtgaaaaaatatgCCATCATGGTGATTGTGACccatgtgaaaaaaaaataaaccaacaCTGCTATTGTGGTAAAGAAAATCGTCATGTCGATTGTTTGCAAGATATTCCATTAGTATACTCCTGTGGTAAAATTTGTAACAATTTACTCGATTGTGGTAATCATAACTGCAATGACATTTGCCACGAAAATCCATGTAATTCTTGTCCTCTAAAACCAGAAACTGTAACACACTGCTGTTGTGGGAAAACACCATTGACAGTAAAACGTGATAACTGTTTAGATCCGATTCCTACCTGCGacgaaatttgttcgaaaaaattacaatgcgGGCAACCAAGTTCACCTCATACTTGTAAAGTGCCCTGTCATTCTGATGATTGCCCGCCTTGTGATTTAACAACATGGGTCAAATGTCGTTGCGGTAACATGGACCGTGAAATTTTGTGCGTTGACTTGACGACAAAAGCTGATGATGCGAGATGTCAAAAGAAGTGCGTTAAAAAACGGTCATGTGGTAAACATAAATGTAATCAATTGTGTTGCATTGATATTGAACATATATGTCCACTACCATGTTCTAAGACACTGAGTTGTGGTAAACATAAATGTGAATTAACATGCCACAAAGGTAGATGTCCGCCATGCTACAGAAGTAGCTTTGATGAATTGTATTGCGAATGTGGAGCTGCTGTCATTTACCCACCAGTACCTTGTGGTACCCGACGACCAACTTGTTCACGTCCTTGCTCTCGTCAGCATTCATGTGGTCATCAAGTTATCCACAATTGTCACAGTGAGACATCATGTCCACCTTGTACGGTACTTAGTCAGAAATGGTGTTATGGCAAACACGAATTGAGAAAAGCTGTACCCTGTTATTTCAATGAACTGTCATGTGGGATGCCATGTGGCAAACCATTGCGATGTGGCAGACATAAATGTATAACTCTGTGTCATCCTGGTCCATGTGAAAAACCAAAACAGTTGTGTACACAACCTTGCACTACACCAAGAGAATTGTGTGGTCACAACTGTGGTGCGCCATGCCATGATGGCAAATGCCCACCAGACAATACACCTTgtaaagaaatggtaaaagtAACTTGTACTTGTGGTCATCGAACTATGACACGAGCTTGTGCTGAAAATTCACGTGAATATCAAAGAATAGCTAGTGGAATACTTGCTAGTAAAATGATTGACATGCAGTTGGGTCATTCTGTTGACTTAGAGCAAGTATTCGGCCAAGGAGCTAGAAAACAAAATCAATTGAGAACATTGGAGTGCAATGATGAGTGTAAAACAATtgaaagaaatagaaaattagcTCTTGGATTGCAGATTGTTAACCCTGATCTTAGTGGCAAACTATTGCCGCGTTACAGTGATTACATGAAACAATGGGCTAAGAAAGATCCGTCATTTTGTCAAATGGTGCATGAGAAATTAACGGAGTTGGTACAACTTGCCAAGACATCGAAACAAAAGTCAAGAAGTTATTCATTTGACAGTATGAACAGAGATAAGCGACACTTTGTGCATGAAGCTTGTGAACATTTTGGGTGTGAGAGTCAAGCTTATGATCAAGAGCCGAAACGTAATGTTGTAGCAACTGCTGTTAAAGACAAAtGCTGGTTGCCAAGTTATAGTCTATTAGAAATGGTTCAAAGAGAAAGCGGTCAACGTAAAGTTCCAAGACCGATGCTAAATACAACTAAGACTACTACCACATCAGGaacaTCACAAGTCCTACCATCAACTGCCAGCAAGACACAAAAATTACAAGCGACAACTAGCACCTCAAATTCATCAAAACCACCAGAACaggaaattgattattttgacTACCCTAATGCTAATTggaagtaa
Protein Sequence
MATWDGSYSGDPTHEDSKLYYYYSNSQNPSDDRQWNHYTSNDNQLSATSYTDNTSTFNQTNKTYYDLPSSSVADNSNCYFENNRKQQSSFRHKTDGSFKNNDYNIVRQSNLHPGANEFIPSNASSSAESSKIFFPDNRSKQQQYGNRKYDKKNNYRQQDTDYPQNSYKGYDKYRKKNVTNNNSNASYSHYSNDYESHKDYPDDSYENTHLSNEIKTRDKDKDKDTGLSSRAPYNGRRPRSHGRYNSNSNSNSDYKNNGNNSARLGKNINHSNSNNCIDENSKQPVSRDPRDERYYRGFNNDNNLDDDKQAAPSTTKKDKKPVKNNNKEFYGDDLRDDRYRSAGSGNRRDDYYEEKNYRDKPNYYYRGYRDNYERDVKSDNKQQIKEENIINWRQKKNSQVKKVNNKKGLEIDDAATQKESLTEQLNRGKLECLVCCEYIRQNDPIWSCNNCYHVLHLKCIKKWAESSQSESGWRCPACQNINLAIPDEYYCFCGKTKDPEWNRRDIAHSCGEICGRTRAKNNCIHKCTLLCHPGSCPLCLTMVRRFCGCGKTYKSLKCSTDTQLSCSNICDKLLNCKQHKCEKICHHGDCDPCEKKINQHCYCGKENRHVDCLQDIPLVYSCGKICNNLLDCGNHNCNDICHENPCNSCPLKPETVTHCCCGKTPLTVKRDNCLDPIPTCDEICSKKLQCGQPSSPHTCKVPCHSDDCPPCDLTTWVKCRCGNMDREILCVDLTTKADDARCQKKCVKKRSCGKHKCNQLCCIDIEHICPLPCSKTLSCGKHKCELTCHKGRCPPCYRSSFDELYCECGAAVIYPPVPCGTRRPTCSRPCSRQHSCGHQVIHNCHSETSCPPCTVLSQKWCYGKHELRKAVPCYFNELSCGMPCGKPLRCGRHKCITLCHPGPCEKPKQLCTQPCTTPRELCGHNCGAPCHDGKCPPDNTPCKEMVKVTCTCGHRTMTRACAENSREYQRIASGILASKMIDMQLGHSVDLEQVFGQGARKQNQLRTLECNDECKTIERNRKLALGLQIVNPDLSGKLLPRYSDYMKQWAKKDPSFCQMVHEKLTELVQLAKTSKQKSRSYSFDSMNRDKRHFVHEACEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEMVQRESGQRKVPRPMLNTTKTTTTSGTSQVLPSTASKTQKLQATTSTSNSSKPPEQEIDYFDYPNANWK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01006722;
90% Identity
iTF_01006722;
80% Identity
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