Mman015715.1
Basic Information
- Insect
- Microplitis manilae
- Gene Symbol
- -
- Assembly
- GCA_030273425.1
- Location
- CP092724.1:21068220-21075545[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.1 15 7.3 1.4 9 23 221 235 216 235 0.83 2 15 5.1 7.8e+02 2.0 3.7 2 23 242 264 241 264 0.95 3 15 9.8e-06 0.0015 19.9 2.9 2 20 298 316 297 319 0.94 4 15 1.6e-05 0.0024 19.3 2.6 1 23 325 347 325 347 0.98 5 15 1.6 2.4e+02 3.6 0.1 2 13 379 390 378 395 0.78 6 15 1.3 2.1e+02 3.8 0.0 6 23 459 476 457 476 0.86 7 15 4.3e-06 0.00067 21.1 0.8 2 23 780 801 779 801 0.97 8 15 0.0035 0.53 11.9 0.6 2 23 808 830 807 830 0.97 9 15 1e-05 0.0016 19.9 2.9 2 20 864 882 863 885 0.94 10 15 1.6e-05 0.0024 19.3 2.6 1 23 891 913 891 913 0.98 11 15 0.0001 0.016 16.8 3.0 1 23 925 947 925 947 0.98 12 15 0.00058 0.089 14.4 3.1 1 23 952 974 952 974 0.97 13 15 0.00013 0.02 16.4 4.1 2 23 984 1005 983 1005 0.97 14 15 1.3 2e+02 3.8 1.0 1 23 1011 1033 1011 1033 0.94 15 15 0.018 2.8 9.7 4.4 2 23 1040 1062 1039 1062 0.93
Sequence Information
- Coding Sequence
- atgaatataaataatgatactgATACTgtcaaaattgaatttaatgaaaattcaacaGTTTTAGACCTCGAATATCATGAAACAACAGttgaATCATTAAGTGGAAGAAATGGTTTATGGACAGAAACTGCAGCTGAAAATAATGATGAAGAACagaatataatatacaatattaaaaaagaaaattttgattataatgACAAAACTGATGGAAGTGATGAAACTATTGTCGAGCAAAATCAGTTAAAACAATGTATTGACATGGCTGCATTATCGACGCCAGTTAAAAATACTTCACTTGCAAATAAACTTTCAGTTTCAAatcatgataattttaaaaataatcgaatttCGTTAATAGAAACTCTTATGAGTAATCAGAAACAGATTAAAGTTGaagataatgaaaattatttcggAAGTTCTCATCATATATCAAATATTCCAAAGTCTTTTCTTTCTTCTGTTCTGCTTGAAAGAATTGAAGTGCCTGGAAAAGTTATTGGAACTTCGAATTCAGTTGCGATgactaatgaaaaaaaattaacagaagTATCATTTGAAAGTGAAACTACTAAACCAGTTGATTCAGAGAagccattaaaaaataataaacctcGTCGTCGTATTGGTAAACTACCTGGTAAGGAATGTTGTTACTCAGCCATCAGTAAATCTCACTTAAATGTTCATATGCGGAAACATAGTGATGCGAAACCTATACATTGTCCAGAATGTCCATTTAGAACTTCTTGTAAATCTAGTATGACACCTCACATGCGTCGATATCATCCAGATCAAATAGATGCTGGTAAGCCTCGTGATTCCAAGTTCACAACAGTAAATCATCTGAAGAATCGTATGCGCACTCATACTGAAAAAGATCCAATCACGTGcgatatttgtaaaaaaacgtttaaaaTGTCGTCTAATTTGAGACGACATATGATTTGTCATTCTGACGAAAGACCATATGAGTGTAATATTTGTcactttaaatttaagagaGCATATGACCTGACATCTCATCTGGGAACGCACATAGTTAAGCATCCAGCAAAGCATACAGAAAAGCATTTATGTAAAGATTATTCAAGAGAATTTACGCGTATGCATACTGCAAAAGATCCGATCACGTGccatatttgtaaaaaaacTCTCATTGAACAAAACGAATTCATATCCTCTGCCATTGGTTTAGTTTCACAAGCTAACGatgaaaatttggatttttatgCTAATCAGTATGGAAATAAGGTTGTAGATGTGCTTGGGCGTATAAAGATTGTGGAAACTGAATCATTAAATGCACAAGAAAATTTGGCAGCAGATATTATAAACAGTCATAATTATAACGATGCACAGGAAGCAATTTGTCGAGAATTATTACCAGATCGATATAGTTTAAAGATTCACATTGAAACCCATAGCAATGGAAGTTTATTCAAATACCCCGAATATCACGAAACAACAGTagttgatcaaaaaaatatggaaGATTTAGATGCAACAATAATTAATGCTCCAATTGTTAAAGatacaatgaaattttttgaaaataatttaaactcacAAGTTGACAATAATTGCAATTATTATTCAGTGATTAATTTATACGAAAGTCATTTAAATCCAAGCAATAAAACTTTGATAAGTCGAAACAATTCTTTGTCTTCCGTGAATTCTGATCAGGCAAGTTTGCTAACtgacgatttttttatttctaatgaaAATGGACACCAAGACAAAAGTAATGATTTGTTGAGTTAtatcaaaattacaaaagttgaATCATTAAGAGGAAGAAATGGTTTATGGACAGAAACTAcagatgaaaataatgatgaaGAACAGAATATAATATACgatattaaaaaagaaaattttgatgataatgaCAAAGCTGATGGAAGTGATAAAACTATTGACGAACAAAAtcagtttaaaaattgtattgacaTGGCTGCATCATCGACGCCAGTTAAAAATACTTCAGTTGCCAATAAACTTTCAGTTTTAAatcatgataattttaaaaataatcaaatatcgTTAATAGAAACTCTTATGAGTAATCAGAAACAGATTAAACTTGAAGATAATGAAAATCATTTTGAAAGTTCTCatcatatttcaaatatttcaaagTCTTTTCTTCCTTTCGTTCTGCTTGAAAGAATTCAAGTACCTGGAAAAGTTATTGGAACTTCGAATTCAATTGCGATGACTAATGAAACAAAATTAACAGAAGTATCATTTGAAAGTGAAACTAATAAACCAGTTGATTCGGAGaagccattaaaaaataataaacctcGTCGTCGTATTGGTAAACTACCTTGTAAGGAATGTGGTTACTCAGCCATCAGTAAATCTCACTTAAATGTTCATATGCGAAAACATAGTGATGAGAAACCTATACAGTGCCCAGAATGTCCATTTAGAACTTCTTATAAATCTAGTATGACACCTCACATGCGTCGATATCACCCAGATCAAATAGATGCTTGTAAGTCCCGTGATTCCAAGCTCACAACAGCAAATCATCTGAAGAAACGTATGGGCATTCATACTGAAAAAGATCCAGTCACATGcgatatttgtaaaaaaacgTTTAGAATGTCGTCTAATTTAAAACGACATATGATTTGTCATTCTGACGAAAGACCATATGAGTGTAATATTTGTcactttaaatttaagagaGCATATGACCTGACATCTCATCTGGGAACGCACATAGTTACGCATACAGAAAATCCTACAGAAAAGCATCAATGTAAAATTTGTTCAAGGGAATTTACGCGtatttattatcttaataTGCACTTAAAAGTTCACTCAGAAAAACAATATAAATGTGAAATTTGTAACCGGAATTTCTTTCATTTGTACTTTTTAAACCAACACATTGAACTTCACAAGCCTTGTCCACCCGGCGAAGTATTAAAGTGTGAATTTTGCCATGAAAGTTACAATGACCAATTTAATTTACGAAACCATACTAAAACTCACAAAcaaggaaaaatttataaatgtaacGTATGCTGTTACAAAACAACAGATTCACTTGCGTTAATAGAACATGCCAACGACCAtacgaataataaattatgtatcTGTTACCAATGTGGGCATtcatttgaaaagaaaaagtttttaatacaACACATGATTCAGAATCACATTAAAAACAAGCAGGCATCAAAAAGAAAAcgacataaaataaattaa
- Protein Sequence
- MNINNDTDTVKIEFNENSTVLDLEYHETTVESLSGRNGLWTETAAENNDEEQNIIYNIKKENFDYNDKTDGSDETIVEQNQLKQCIDMAALSTPVKNTSLANKLSVSNHDNFKNNRISLIETLMSNQKQIKVEDNENYFGSSHHISNIPKSFLSSVLLERIEVPGKVIGTSNSVAMTNEKKLTEVSFESETTKPVDSEKPLKNNKPRRRIGKLPGKECCYSAISKSHLNVHMRKHSDAKPIHCPECPFRTSCKSSMTPHMRRYHPDQIDAGKPRDSKFTTVNHLKNRMRTHTEKDPITCDICKKTFKMSSNLRRHMICHSDERPYECNICHFKFKRAYDLTSHLGTHIVKHPAKHTEKHLCKDYSREFTRMHTAKDPITCHICKKTLIEQNEFISSAIGLVSQANDENLDFYANQYGNKVVDVLGRIKIVETESLNAQENLAADIINSHNYNDAQEAICRELLPDRYSLKIHIETHSNGSLFKYPEYHETTVVDQKNMEDLDATIINAPIVKDTMKFFENNLNSQVDNNCNYYSVINLYESHLNPSNKTLISRNNSLSSVNSDQASLLTDDFFISNENGHQDKSNDLLSYIKITKVESLRGRNGLWTETTDENNDEEQNIIYDIKKENFDDNDKADGSDKTIDEQNQFKNCIDMAASSTPVKNTSVANKLSVLNHDNFKNNQISLIETLMSNQKQIKLEDNENHFESSHHISNISKSFLPFVLLERIQVPGKVIGTSNSIAMTNETKLTEVSFESETNKPVDSEKPLKNNKPRRRIGKLPCKECGYSAISKSHLNVHMRKHSDEKPIQCPECPFRTSYKSSMTPHMRRYHPDQIDACKSRDSKLTTANHLKKRMGIHTEKDPVTCDICKKTFRMSSNLKRHMICHSDERPYECNICHFKFKRAYDLTSHLGTHIVTHTENPTEKHQCKICSREFTRIYYLNMHLKVHSEKQYKCEICNRNFFHLYFLNQHIELHKPCPPGEVLKCEFCHESYNDQFNLRNHTKTHKQGKIYKCNVCCYKTTDSLALIEHANDHTNNKLCICYQCGHSFEKKKFLIQHMIQNHIKNKQASKRKRHKIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -