Basic Information

Gene Symbol
stc
Assembly
GCA_964016945.1
Location
OZ024710.1:1828272-1832379[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 2 3.6e+04 -4.3 1.6 15 19 503 507 502 507 0.81
2 14 0.16 2.8e+03 -0.6 0.4 4 10 536 542 535 544 0.94
3 14 2e-05 0.36 11.9 14.0 3 18 552 567 538 568 0.87
4 14 8.1e-07 0.014 16.3 15.5 1 18 604 621 604 622 0.92
5 14 2.7e-07 0.0049 17.8 11.7 1 19 660 678 660 678 0.99
6 14 0.72 1.3e+04 -2.7 0.6 5 10 707 712 707 712 0.95
7 14 2.9e-05 0.52 11.3 13.2 4 18 725 739 718 740 0.86
8 14 1.3 2.3e+04 -3.5 2.2 5 10 769 774 769 774 0.93
9 14 0.0042 75 4.4 11.6 1 11 780 790 780 802 0.88
10 14 3.7e-08 0.00066 20.6 11.5 1 18 807 824 807 825 0.97
11 14 0.39 6.9e+03 -1.8 0.5 5 10 853 858 852 859 0.92
12 14 2 3.6e+04 -6.4 10.8 1 19 864 882 862 882 0.74
13 14 1.2e-07 0.0022 18.9 12.2 1 16 918 933 918 944 0.87
14 14 9.3e-06 0.17 12.9 14.8 1 18 950 970 950 971 0.86

Sequence Information

Coding Sequence
ATGGCCACCTGGGACGGCTCCTACTCAGGGGATCCTACTCACGAAgacagtaaattattttactactaTTCAAATTCTCAAAATCCTGTTTCTGATGATCGTCAATGGAATCAGTACTCCAGTAACGACAACCAATTATCCGCAACGACTAGTTACACTGATAAtacttcaaaatttaatcaaacaaACAAAACTTACTATGATTTACCATCAAGTTCCATAGCCGATAATTCAAActgttattttgaaaataatcgtAAGCAACAATCATCATTTCGCCATAAAACTGACGGATCATTCAAAAACAACGACTACAATATTGTACGGCAATCAAATTTACATCCAGGTGCCAATGAATTTATTCCATCAAATGCTAATTCATCAGCAGAAccatcgaaaattttttttcccgacaATAGAAGCAAACAACAATACGGCAACcgtaaatatgataataaaaaaaataattaccgtcAACAAGACACAGATTATCCCCAAAATTCATACAAAGGTTACGataaatacagaaaaaaaaatgtaactaataataatagtaatgcatcttatagtaattacagtaataatgattatgaatCGCACAAAGATTATCCAGATAACGACAGCTATGAAAACACTCAATTgagtaatgaaattaaaactaGAGATAAGGATAAAGATAAGGATACCACTGGGTTATCATCATCCAGAGCACCATACAATGGACGAAGACCTAGAAGTCATGggagatataatttaaattcaaattctgattataaaaataatggtaaCAATTCAGCAAgacttggaaaaaatataaatcatagtagtaatagtaataattgtaTTGATGAAAATAGTAAACAGCCTGTAAGCAGAGATCCTCGTGATGAAAGATATTATCGCGGATTTAATAACGACAATAATTTAGATGATGATAAACAATCAGCGCCGAGTACTACGAAAAAAGATAAGAAGCCggtgaaaaataacaataaagaaTTTTACGGCGACGATTTAAGAGATGATAGATACCGAAGTGCTGGCAGTGGCAGTAGACGAGACGATTAttacgaagaaaaaaattatcgagaCAATAAACCGAATTATTACTATCGGGGTTACCGCGATAATTATGAGCGTGATGTTAAGTCTGATAATAAACAACagataaaagaagaaaatattaGTAATAGCAGTAGTAACACTAGAGCTAAGGAAGAGTTTAGTAAAGATGACAATTTGTCGTCAGTAAATTggcggcaaaaaaaaaatagtcaagtagttaaaaaagtaaataataaaaagggaCTGGAAATAGATGATGCCGCGACACAAAAAGAATCTTTGACTGAACAATTAAACAGAGGTAAACTTGAATGCTTAGTTTGCTGTGAATACATCAGGCAAAATGATCCAATATGGTCTTGTAATAATTGCTATCATGTGTTACATTTGAAATGCATTAAAAAATGGGCGGAATCATCACAAAGCGAGAGCGGGTGGCGATGTCCAGCCTGCCAGAATATAAATCTCGTTATTCCTGatgaatattattgtttttgtgGTAAAATGAAGGATCCAGAATGGAATAGACGTGACATTGCACACTCATGTGGTGAAATATGTGGTCGCACACGggctaaaaataattgcatcCATAAATGTACGTTACTTTGTCATCCAGGATCATGCCCATTGTGTTTGACTATGGTAAGACGTTTTTGCGGTTGTGGTAAAAcgtataaaagtttaaaatgtaGTACTGATACTCAGTTGTCTTGTTCAAATAtttgtgataaattattaaattgtaaacaacataaatgtgaaaaaatatgCCATCATGGTGATTGTGACccatgtgaaaaaaaaataaaccagcATTGCTATTGTGGTAAAGAAAATCGTCATGTCGATTGTTTGCAAGATATTCCATTATTATATTCCTGTGGTAAAATTTGTAACAATTTACTCGATTGTGGTAATCATAAATGCAATGACATATGCCACGAAAATTCATGTAATTCTTGTCCACTAAAACCAGAAACTGTAACACACTGCTGTTGTGGCAAAACACCATTGACAATTAAACGTGATAACTGTTTAGATCCGATTCCTACTTGCGACGAAATTTgttcgaaaaaattacaatgcggACAACCAAGTTCACCTCATACTTGTAAAGTACCCTGTCATTCTGATGATTGCCCGCCTTGTGATTTGACAACATGGGTCAAATGTCGTTGTGGTAACATGGACCGCGAAATTTTGTGCGTTGACTTGACAACAAAAGCTGATGATGCGAGATGTCAAAAGAAGTGCGTTAAAAAACGATCATGTGGTAAACATAAATGTAATCAATTGTGTTGCATTGATATTGAACATATATGTCCACTACCATGTTCTAAGACACTGAGTTGCGGTAAACATAAATGTGAATTAACATGCCACAAAGCTAGATGTCCGCCATGCTACAGAAGCAGCTTTGATGAATTGTATTGCGAATGTGGAGCTGCTGTCATTTACCCACCAGTACCTTGTGGTACACGACGACCAACTTGTTCACGTCCTTGCTCACGTCAGCATTCATGTGGTCATCAAGTTATTCACAATTGTCACAGTGAGACATCATGTCCACCTTGTACGGTACTTAGTCAAAAATGGTGTTATGGCAAACACGAATTGAGAAAAGCTGTACCCTGTTATTTTAATGAACTGTCATGTGGAATGCCATGTGGTAAACCATTGCGATGTGGCAGACATAAATGTATAACTCTGTGTCATCCTGGTCCATGTGAAAAACCAAAACAGTTGTGTACACAACCTTGCACTACACCAAGAGAATTGTGTGGTCATAACTGTGGTGCGCCATGCCATGATGGCAAATGCCCACCAGACAATACACCTTgtaaagaaatggtaaaagtAACTTGTACTTGTGGTCATCGAACAATGACACGAGCTTGTGCTGAAAATTCACGTGAATATCAAAGAATAGCTAGTGGTATACTTGCTAGTAAAATGATTGACATGCAGTTGGGTCATTCTGTTGACTTGGAGCAAGTATTTGGCCAAGGAGCTAGAAAACAAAATCAATTGAGAACATTGGAGTGCAATGATGAGTGTAAAACAATtgaaagaaatagaaaattagcTCTTGGGTTACAGATTGTTAATCCTGATCTTAGTGGCAAACTATTGCCGCGTTACAGTGATTATATGAAACAATGGGCTAAGAAAGATCCGTCATTTTGTCAAATGGTACATGAAAAATTAACGGAGTTGGTACAACTTGCCAAGACCTCGAAACAAAAGTCAAGAAGTTATTCATTTGACAGCATGAATAGAGATAAGCGACACTTTGTGCATGAAGCTTGTGAACATTTTGGGTGTGAAAGTCAAGCTTATGATCAAGAGCCGAAACGTAATGTAGTAGCAACTGCTGTTAAAGACAAATGCTGGTTGCCAAGCTATAGTCTATTGGAAATGGTTCAAAGAGAAAGCGGTCAACGTAAAGTGCCAAGACCGATGCTAAATACAACTAAGACTACTACCACATCAggAACATCACAAATCCTACCATCAACTGCCAGCAAGACACAAAAATTACAAGCGACAACTAGCACTTTGAATTCATCAAAATCATCAGAACAGGAAATTGATTACTTCGACTTTCCCAATGCTAATTggaagtaa
Protein Sequence
MATWDGSYSGDPTHEDSKLFYYYSNSQNPVSDDRQWNQYSSNDNQLSATTSYTDNTSKFNQTNKTYYDLPSSSIADNSNCYFENNRKQQSSFRHKTDGSFKNNDYNIVRQSNLHPGANEFIPSNANSSAEPSKIFFPDNRSKQQYGNRKYDNKKNNYRQQDTDYPQNSYKGYDKYRKKNVTNNNSNASYSNYSNNDYESHKDYPDNDSYENTQLSNEIKTRDKDKDKDTTGLSSSRAPYNGRRPRSHGRYNLNSNSDYKNNGNNSARLGKNINHSSNSNNCIDENSKQPVSRDPRDERYYRGFNNDNNLDDDKQSAPSTTKKDKKPVKNNNKEFYGDDLRDDRYRSAGSGSRRDDYYEEKNYRDNKPNYYYRGYRDNYERDVKSDNKQQIKEENISNSSSNTRAKEEFSKDDNLSSVNWRQKKNSQVVKKVNNKKGLEIDDAATQKESLTEQLNRGKLECLVCCEYIRQNDPIWSCNNCYHVLHLKCIKKWAESSQSESGWRCPACQNINLVIPDEYYCFCGKMKDPEWNRRDIAHSCGEICGRTRAKNNCIHKCTLLCHPGSCPLCLTMVRRFCGCGKTYKSLKCSTDTQLSCSNICDKLLNCKQHKCEKICHHGDCDPCEKKINQHCYCGKENRHVDCLQDIPLLYSCGKICNNLLDCGNHKCNDICHENSCNSCPLKPETVTHCCCGKTPLTIKRDNCLDPIPTCDEICSKKLQCGQPSSPHTCKVPCHSDDCPPCDLTTWVKCRCGNMDREILCVDLTTKADDARCQKKCVKKRSCGKHKCNQLCCIDIEHICPLPCSKTLSCGKHKCELTCHKARCPPCYRSSFDELYCECGAAVIYPPVPCGTRRPTCSRPCSRQHSCGHQVIHNCHSETSCPPCTVLSQKWCYGKHELRKAVPCYFNELSCGMPCGKPLRCGRHKCITLCHPGPCEKPKQLCTQPCTTPRELCGHNCGAPCHDGKCPPDNTPCKEMVKVTCTCGHRTMTRACAENSREYQRIASGILASKMIDMQLGHSVDLEQVFGQGARKQNQLRTLECNDECKTIERNRKLALGLQIVNPDLSGKLLPRYSDYMKQWAKKDPSFCQMVHEKLTELVQLAKTSKQKSRSYSFDSMNRDKRHFVHEACEHFGCESQAYDQEPKRNVVATAVKDKCWLPSYSLLEMVQRESGQRKVPRPMLNTTKTTTTSGTSQILPSTASKTQKLQATTSTLNSSKSSEQEIDYFDFPNANWK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01006722;
90% Identity
iTF_01006722;
80% Identity
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