Mdep027046.1
Basic Information
- Insect
- Microplitis deprimator
- Gene Symbol
- -
- Assembly
- GCA_964016945.1
- Location
- OZ024714.1:15766689-15776005[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0042 0.62 11.6 2.0 2 21 54 75 53 76 0.92 2 16 0.0065 0.97 11.0 1.0 1 23 84 107 84 107 0.98 3 16 3.5 5.2e+02 2.4 1.7 1 21 130 152 130 153 0.85 4 16 0.0028 0.42 12.1 1.1 1 21 198 220 198 221 0.90 5 16 0.097 15 7.3 1.0 1 23 229 252 229 252 0.96 6 16 0.0019 0.28 12.7 0.3 1 21 267 289 267 290 0.95 7 16 6.5 9.8e+02 1.5 3.0 1 23 298 321 298 321 0.94 8 16 0.51 77 5.0 2.4 1 20 368 389 368 391 0.84 9 16 0.17 25 6.5 4.7 1 23 399 422 399 422 0.94 10 16 0.0064 0.96 11.0 1.0 4 21 484 501 480 502 0.87 11 16 0.0012 0.18 13.3 4.6 1 23 510 533 510 533 0.97 12 16 0.084 13 7.5 1.0 1 21 554 576 554 577 0.94 13 16 1.5 2.2e+02 3.6 7.0 1 21 585 605 585 606 0.93 14 16 0.0096 1.4 10.4 0.3 1 21 636 658 636 659 0.94 15 16 0.85 1.3e+02 4.3 3.7 1 23 667 690 667 690 0.94 16 16 0.008 1.2 10.7 0.5 2 21 711 732 710 733 0.92
Sequence Information
- Coding Sequence
- ATGTGTGTAGTTGAGTTTTTAAAGGAGAAGGGGCATCAGTTAACTCAGAAATTCGTGCTCTGCGTAGACTACGTCCTAGAATTTCCAAAGTCACAGACAATTTTTACCAGCAAAGGACAGCCACCAAGTAATGGATCGGCCGGAAATCAGGAACGACTCGTTTGCAAAAATGAACACTgcaacaaaacatttaaaaacgaGAAATCACGACGATCTCACATGTTACGAATTTGCAACCAGCCATTGAGATACAAATGCGATTACTGTGATTTCAAAGCCGTTAACAAAATCTATGTGTCCAGGCACATCAACAAAAATCACAATAATAACCCAAAAAATGTCACAGAAAGTCTTGatctcaataataaaatacgtcaaaaacaaaattacgcGTGCGCCAATAAAAATTGTTGCAAAAAATACTCAACGAGCGTAAAGTTGAACCAACATGTTCAATATGAGTGTGGAAAACCCTTTCGCTTCAAGTGTTTTTACTGCGATTACAAAAATCTTAAAAAAGAAGGGGAAATTTTGTACACGTACGACGCGCTGTCACCAGAGGGCAACCCGATTCAAATAACAGAAAAACGTTACGCTTGTTTGAACGCAAACTGCAACAAAACGTTTAAAAACAAACGAAACCGTAACGACCATCAGCGAAATTTGTGCAATAAACCCTCTAGATATAAGTGCGCGTATTGCAACCGCAGATCTCTTTATTCAGCGGATATCAAAAGACATTTAATTACCAAACATAaaCCAAAACAAGGAAGAAAAGCAAAAAATGGAGCGAAACCGTTTGTTTGTCCTGATCCACTGTGCAGGAGATCTTACAGATCTCAATATGATTATGATAGACACATTAGATATAATTGCACTCAGCTGCCGTGGTACAAATGCGGGCACTGCGCTCACAAGGCGCATCAAGCTGCGGATATTAAGAGCCACATTTTCCGTATTCACAAGGGCTCTGCAGCTGAAGTAATAGAATTTTATGACCCCAAGGATAAAGATTGGATCTACGGTCAGCCATCTTATTATCCGAAAATGAGCCAGCAGTCATGGGTCAATGATCCACTTTTGACAGTAACAAGATCGCAGTTTGTTTGTTCAAATTCAAACTGCaacaaagtatttaaaaacgaaaaatctCGAAACTGTCATATGCAGCAAGTTTGTAATCAGCCATTGCGGTACAAATGCAGTTACTGCGACCACAAATCGCATTATTCAAAAGACATTAGAAGACATATCGGTATCAGGCATATCGGACTTCCGCAAAATGTCATTGAATTATTCGATCCCCATTTCAAGACCCGTCTGTTCATTTGCCCGAATGATAATTGTAaattgaAAACTCTACGGGTGGTGCTGACGCGGATAACCGGCGACAAATTATCACCAAAAAAATCAGATCTGCTGGTGGTGAAGAAATGGGCATGCGCGAATCCAAATTGCGATAAATCATTCTCCAGCAAATGTAATCTTGATTATCACCGTCAGAAGTTTTGTAATAAGCCGCCGAGATACAAATGTTATCACTGCGACTATAAATCACAGCGACTATCATCTTTAAGGAGACATTACATGAGTGTTCACAGTGAATTGGAATTCAAAGCTATAAAATTGGTTTCTTCTTCAATTGATGAGGCAAGACGTTTTCGCTGCACAAGACCTAATTGCGAAAAAcgatacaaatatatgaaagACTATAGGGCTCATGTTAATTATGAGTGCGGCAAACTTCCGCGGTTCAAATGTCACTATTGCGACTATAAAAGTTGTTTTAAAACCCGGGTTAAAAGACACTGGAAAAacaTGAAAAACCCACGGGTGTTTCTCGCGAGGATGTACGGGATCCAGTCACCGGATGTTAACCAAATAATGTCGCCATCTGGAAAAAGATTCGCATGCCCGAATACAAATTGCGCGAAAACATTTGAAACAAAGGGAGCTTTTAATTATCACTTGAGATATTTATGTAACAAAGCGCCAAGATTCAAATGTTACTTCTGCGATTACACAACTCATTACGCGCAAAATGTCCGCGCTCACTCAAAATGGAAGCACAGAAACACAGAACCTAAAATAGTCCAACTCTACGACCCCCACATGGAAACGCGGACTTTAAGTTGCCCGAATTCAAActgcagtaaaaaatatcgCACTCTTCGCGCTTTGAAAAAACACGTTAATTATGAATGCGGGACTCCCAATAGTATGAAATGTCATTACTGTGATTTTGAACATTACTACAGATGGCGAATAAAAGAACATTCGATTTCCAAGCATCCAGACAAAGAATTTCGGTTTGATCTTTtagaagaaaatatttaa
- Protein Sequence
- MCVVEFLKEKGHQLTQKFVLCVDYVLEFPKSQTIFTSKGQPPSNGSAGNQERLVCKNEHCNKTFKNEKSRRSHMLRICNQPLRYKCDYCDFKAVNKIYVSRHINKNHNNNPKNVTESLDLNNKIRQKQNYACANKNCCKKYSTSVKLNQHVQYECGKPFRFKCFYCDYKNLKKEGEILYTYDALSPEGNPIQITEKRYACLNANCNKTFKNKRNRNDHQRNLCNKPSRYKCAYCNRRSLYSADIKRHLITKHKPKQGRKAKNGAKPFVCPDPLCRRSYRSQYDYDRHIRYNCTQLPWYKCGHCAHKAHQAADIKSHIFRIHKGSAAEVIEFYDPKDKDWIYGQPSYYPKMSQQSWVNDPLLTVTRSQFVCSNSNCNKVFKNEKSRNCHMQQVCNQPLRYKCSYCDHKSHYSKDIRRHIGIRHIGLPQNVIELFDPHFKTRLFICPNDNCKLKTLRVVLTRITGDKLSPKKSDLLVVKKWACANPNCDKSFSSKCNLDYHRQKFCNKPPRYKCYHCDYKSQRLSSLRRHYMSVHSELEFKAIKLVSSSIDEARRFRCTRPNCEKRYKYMKDYRAHVNYECGKLPRFKCHYCDYKSCFKTRVKRHWKNMKNPRVFLARMYGIQSPDVNQIMSPSGKRFACPNTNCAKTFETKGAFNYHLRYLCNKAPRFKCYFCDYTTHYAQNVRAHSKWKHRNTEPKIVQLYDPHMETRTLSCPNSNCSKKYRTLRALKKHVNYECGTPNSMKCHYCDFEHYYRWRIKEHSISKHPDKEFRFDLLEENI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -