Mdep031164.1
Basic Information
- Insect
- Microplitis deprimator
- Gene Symbol
- -
- Assembly
- GCA_964016945.1
- Location
- OZ024716.1:12747903-12750366[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.1e-05 0.014 16.8 2.7 1 23 334 356 334 356 0.98 2 12 8.2e-05 0.012 16.9 1.2 1 23 360 382 360 382 0.98 3 12 0.00015 0.023 16.1 3.4 1 23 387 409 387 409 0.96 4 12 0.00027 0.04 15.3 4.4 1 23 459 481 459 481 0.97 5 12 0.00087 0.13 13.7 1.4 1 23 486 508 486 508 0.97 6 12 0.00011 0.016 16.5 2.2 1 23 562 584 562 584 0.98 7 12 0.00014 0.022 16.2 1.0 2 23 592 613 591 613 0.97 8 12 1.1e-06 0.00016 22.9 2.1 1 23 624 646 624 646 0.96 9 12 0.00038 0.057 14.8 1.3 1 23 652 674 652 674 0.97 10 12 0.00018 0.026 15.9 0.7 1 23 680 702 680 702 0.98 11 12 5.2e-06 0.00078 20.7 2.0 1 23 708 730 708 730 0.96 12 12 9.4e-05 0.014 16.8 0.3 1 22 736 757 736 757 0.96
Sequence Information
- Coding Sequence
- ATGAGCGAGTGTTACCTGGATTTTGATAGAGTTTGTAGAATATGTTTAACAGAATCACAAAATTTAACATCATTGTTTTGTAATGATTCAGTACCAGGTGTTTTTCCAAGTTTATCAAAAAGAATATCAGCATGTGGAgctattgaaataaatgagAGAGATGGATTGCCATCATCAATATGTGATAGTTGTATTTATAAAGCAAGTGTGGCACATGAATTTCGTGAACAGTGTCAGAATTCCGATGCGCGATTACGTCTCTGTTACGACAAACCAACTCGCTTACAAtcaaatTTTCAGGACTCAAGCACGCAAACAGAAACCGAAGAGAGAACAATGgctaaaaatgttaattcaaATTACTTTGTTAAAGAAGAAATTCAAGGATTAAGTCACGAATTAAATACTATCGTTTATCATCAGAATCCACAAGTTGATGTAACAGACAATCAAATAGTCTctgaagataaattatttctttgtaATATTGGATTTCAAGCTAAAGAATTAGATAAAGAATCAGCGATCACTCAAGACTCTGCTCATCATCAAGAGTCTGCTCATCATGAAGACCAGCATCAGCTCGAGCATCAGGAATTACAGCATCAAGTTCTAGTTCCAGAGTCGCAGCACGTGTCCATCCAAGTCGCGATGGAAACTGAACATTTGACGGAGAACGTCACCACGATAAGCGAAATAAAACCTGCCGCCACGGAGTACATTGCTGATGAATTACTGACTACTGATGAGACTGGTAACGAAGACGAAGAATTGGAAGACGAGGACGAGGAGACTGATGCCCACGTTGGCGAGTTTGATAAAGAACAAGACATTTCATTAGAATTAGAAGACAAGTGGACTGGAGAGATCGAGGAGCCGGCACCCAGCAAAAGGTTGACGCGTAAAGCTAAAGACATTGCCGGAAAATCCTACAGCGTTGATGAACTTGATGAGGATTTGCctgataataatgacaatgacGATGACGACGAGCCTAAATTCAAATGTAAGGTTTGTTCCAAACGTTACAATACGCAGAAGGGTTTAAAAAACCATTCTCAAGTACATGACAAAAAGCACAAATGTCCTGTATGTTTGAAATCATTTtacaatattgaaaatatggaAAAACATGTGAAAGTTCATGAGTCAAAGCCACATGCATGCCAACTTTGCCACACGTCTTTTACAAAACCCCAGAGTTTAGTCCGGCATTTAAAAATCCACTCGGAAAAATTCCCgggtagtaataataataatttaaagaacaATGATAATGGCACAGTATCAATAGTGAGGACTGAAGATACCGAAGATGATGACGATGGGTCTCAGACAAATGAAACAGATGAATTTGACAGTGCGCCTGGTTTGTACAAATGCAGTGAATGCAATCAATTTTGttcaacattaaaaaatttaaaaagacacTCATTGATACACGgtgacaaaaaatattcatgtactgtttgtaaaaaatggtttttcCGACCAGACACGTTGAAAAAACACGCCGAAAAACATGGGCATGGTTTATTAGACAATTTggttgatgaaaataaattatatgagtCTGATGACGAGACATTTAATCGCAGCAATTCTACTACTGGTAATAATTCAAACGGGACCAATGAccttgacaataaaaaactagACAGTGATGAAGATGCTTCTGGTGAATACAAATGCCAGCACTGTGACAAAGTGATGGCAACTAAAAAAGGACTAAGACGTCACGTGTCAATGCACAAACCAAAAGCTGAACCAGTAACATGTGAGATTTGTAAAAAAGTGTGCGCTAGTCAAGCCAGACTTGTTCTTCATCAAAGAACTCACAATAAACCGAAAGAAAAAGTACCGCGGGAATATCTTTGTCATATATGTAGCAAAGTATATCCGAGCAATTCCTCGCTCACTTATCACATGAGGACACACACGGGTGTGAAACCTCACGTATGTCAGACATGTAACAGCGGGTTTACAACAACCACGAGCCTTGCAAATCATATTCGCATACATACTGGCGACAAGCCCTTCGTTTGTCACGTGTGCAGTGCCGCGTTCGCCGTCAGCTCGGCCTTCAGACGTCACTTGACGCGTCACACTGGAGAAGCTAATTATCTGTGCAAAACATGCGGCAAAGCGTTCAAAAGACTCAGCACACTCAAGGAACACACGTACACACATTCAGGGGAAAAACCGTACGTTTGTAAAACGTGCGGGGCTGCTTACAGTCACAGTGGAAGTTTGTTCGCTCATCAAAAACGCTGCCGAGCTCAGTATGGTGAGATGGTCAACTCGGAAAATAATCATTCGCATATTTCGCATCATATTAATGTTAGTAATGTGCAGACAGCGGTCAGATCGCTTGCTGTCATTGGacaaatgttttaa
- Protein Sequence
- MSECYLDFDRVCRICLTESQNLTSLFCNDSVPGVFPSLSKRISACGAIEINERDGLPSSICDSCIYKASVAHEFREQCQNSDARLRLCYDKPTRLQSNFQDSSTQTETEERTMAKNVNSNYFVKEEIQGLSHELNTIVYHQNPQVDVTDNQIVSEDKLFLCNIGFQAKELDKESAITQDSAHHQESAHHEDQHQLEHQELQHQVLVPESQHVSIQVAMETEHLTENVTTISEIKPAATEYIADELLTTDETGNEDEELEDEDEETDAHVGEFDKEQDISLELEDKWTGEIEEPAPSKRLTRKAKDIAGKSYSVDELDEDLPDNNDNDDDDEPKFKCKVCSKRYNTQKGLKNHSQVHDKKHKCPVCLKSFYNIENMEKHVKVHESKPHACQLCHTSFTKPQSLVRHLKIHSEKFPGSNNNNLKNNDNGTVSIVRTEDTEDDDDGSQTNETDEFDSAPGLYKCSECNQFCSTLKNLKRHSLIHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDENKLYESDDETFNRSNSTTGNNSNGTNDLDNKKLDSDEDASGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICKKVCASQARLVLHQRTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCQTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVNSENNHSHISHHINVSNVQTAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00381314;
- 90% Identity
- iTF_01006496;
- 80% Identity
- -