Mdem011243.1
Basic Information
- Insect
- Microplitis demolitor
- Gene Symbol
- -
- Assembly
- GCA_000572035.2
- Location
- NW:1120224-1145769[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.17 12 5.9 3.1 3 23 333 354 332 354 0.95 2 17 0.0013 0.089 12.7 4.1 1 23 360 382 360 382 0.98 3 17 1.5 1.1e+02 3.0 6.1 1 23 388 410 388 410 0.97 4 17 0.0012 0.088 12.7 0.4 2 23 416 438 415 438 0.93 5 17 0.0055 0.39 10.6 0.2 2 23 448 469 448 469 0.98 6 17 0.14 10 6.2 3.0 1 23 475 497 475 497 0.97 7 17 0.0015 0.11 12.4 0.4 3 23 504 525 502 525 0.93 8 17 0.14 9.7 6.2 5.6 1 23 534 559 534 559 0.96 9 17 0.013 0.92 9.5 0.3 2 23 892 913 891 913 0.94 10 17 0.00034 0.025 14.4 0.5 2 23 920 942 919 942 0.97 11 17 3.1e-05 0.0022 17.7 3.3 2 20 976 994 975 997 0.94 12 17 1.1e-05 0.00077 19.2 2.6 1 23 1003 1025 1003 1025 0.98 13 17 7e-05 0.005 16.6 3.0 1 23 1037 1059 1037 1059 0.98 14 17 0.0056 0.4 10.6 2.3 1 23 1064 1086 1064 1086 0.97 15 17 0.00047 0.034 14.0 4.6 2 23 1096 1117 1095 1117 0.97 16 17 1.2 85 3.3 1.0 1 23 1123 1145 1123 1145 0.94 17 17 0.012 0.87 9.5 5.4 2 23 1152 1174 1151 1174 0.93
Sequence Information
- Coding Sequence
- ATGAGTGTAATCGAAATCATCGAAATAAGTAGTGACCAAGATGATGATGACGCTTCTACATTAGTTGATGTTTCGCTTGAAAAAACTGATGATATTGATGTGCAACAATACAGTGATAGAAGAATAACAAAGACTCAGCCACAATATAAAGACGCTAATAATCCAGAAATTATTGACAgtcaatatttgataaataaactaataaatagtaatgcGAAGATTATTAACAGTCTCATGGAACAAAACCAATTATTATCTTTCACTAATGATTCCATTTCACAGGGTAacgatgaatatttaaaattgtatgcTACAcggtatgaaaataatattatggatTCCCTCAGTCGTATAAAGATTGTGAAAATCGAATCATTGAATGTACAAGAAAATTTGACTGCGGATATTATAGACAGTTATAATGATAACGATGTACAGGAAGTAATTCCTGACAGTAACAGACAAAATTCGAGTAATGGGAATACGAatcaattaaacttaaaaaatattgaagagaCAACAAATGATATTTGTCATCGAGAATCGTCTACTGTGATTGAAACTCCAATTGATAATGAATTTCCATTATTTAAACGGAAAGATttgaaagaaatttcaaatagtaaACACCAAACTGAAAAGATTTCTAAAtcttcattgaaaaaatttaataaatgtcttCCAATGGTTGAACTTGACAGAATCTCAGTATCTGAGAACAACATAATTTCTTTAAGCAACGCagaaaatgatattattttcgTAAATAACGAAGAaaacattataatttcttcaagTAACGCaaaaaacacaattttttcaagtaacgTAGAAAACAACATACTTTCTTTAAACAACGCAGAAAACGATATTATTTCTGTAAGTAACAAAGAAAGCAATATAATTTCTTTACGTAACACAgaaaatgttataatttcTTCAAGTAACGTAGAAAACACTGTAATTTCTTCAAGTAACgcagaaaatgataattattgcaGAGAATGTAACCGCTTTTTTGCTTcaacaaaaaaatttgtatatcaTAAACGATATCGTCACAATGGAAGGAAGTGTTACAAGTGTGAAAAATGTGATTATGCAAGCAATGAAAAATCGCATTTTATACGTCACAAAACAACGCATACTAGCGAAGGTCCATATCAATGTTTTTGTTGTTCGTTTACTTTTATGTACAAAAACGCTTTGAAGTCACATTTGTTTACtcatattgataaaaatttatcatgtgACATTTGTCATGAGAAATTCGAAAAAgcaaatttactaataaaccacataatttattatcattcgaTTTCTCCATCTGTTAGGACGCGGCAATGTAAAGTTTGTCAAGAATTATTACCAGATCGATATAGTTTGAAGATTCATATTGAAACCCATAAAATTGGAAGTTTATTCAAATGTAATACTTGTTGTTATAAAGCAACATCCTCACAAAACTTAGAGgcacatgtaaaaaatcacataagcaataaaattatttgtgatgATTGCGGTAGGTCgattgcaaataaaaataaatttaaacgacATTGGTATCgaatgcataatttttttaaaaaatcaagagTTTACAAGTGTACTCATTGCCATAATCGTATTACTTATGTACGATATGATCATTTTATTCGTCACATTATCAATATCCATGGAATTGAATATCTAGAGcaagataaaatagattgtagtataaaaatgaatataaataatgatactgatactgtcaaaattgaatttaatgaaaattcaacaattttaGACCCTGAATATCACGAAACAAGAGTTGTTGATAAGGAAAATATGGAAGATTTAGatgaaacaataattaatgagcCAATTGTTAAAgatacaatgaaattttttgaaaataatttaaactcacaagttgataataattttaattattattcagtaattaatttatacgaGAGTGATTTAAATCCAAGCAATAAAACTTGGATAAGTCGAAACAATTCTTTGTCTTCCGTAAATTCTGATCAGGCAAGTTTGCTAACTGATGATTTCTTTATTTCTAATGAAAATGAACACCAAGACAAAAGTAATGATTTGTTGAGTTacatcaaaattacaaaagttgaATCATTAAGTGGAAGAAATGGTTTATGGACAGAAACTatagatgaaaataatgatgaagAACAGAATATAATATACGATATTAAAAAAGagaattttgattataatgaCAAAGCTGATGGAAGTAATAAAACCATTGACGAGCAaaatcagtttaaaaaatgtattgacaTGGCTGCATCATCGACGCCAGTTAAAAATACTTCACTTGCAAATAAAACttcagttttaaataatgataattttaaaaataatcaaatttcgtTAATAGAAACTCTTATAAGTAATCAGAGACAAATTAAAGCTGAAGATAATACAAATTCTTTTGATAATTCTCATCACATATCAAATATTCCAAAGTCTTTTCTTCCTTCTGTTCTGCTTGAAAGAATTGAAGTGCCTGGAAAAGTTATTGGAACTTCAAAATCAGTTGCGAAGActaatgaaacaaaattaacAGAAGTATCATTTGAAAGTGAAACTAATAAACCAGTTGATTCAGAGAagctattaaaaaataataaaccgcGTCGTCGTATTGGTAAACTACCTTGTAAGGAATGTGGTTACTTAGCCCTCAGTAAATCTTACTTGAATCTTCATATGCGAAAACATAGTGATGAGAAACCTATACAGTGCCCAGAATGTCCATTTAGAACTTCTTATAAATCTAGTCTGACACCTCACATGCGTCGATATCATCCAGATCAAATAGTTGCTTGTAAGCCCCGTGATTCCAAGCTCACAACAGCAAATCATCTGAAGAAAAGTATGCGCATTCATACTGAAAAAGATCCAATCACGTGcgatatttgtaaaaaaacgtTTAGAAAGTTGTCTTATTTGAAACGACATATGATTTGTCATTCTGACGAAAGACCGTATGAGTGTAATATTTGtcactttaaatttaagagaGCATATGACCTGACATCTCATCTGGGAACGCACATAGTTACGCATACAGAAAAGCATACAGAAAAGCATCAATGTAAAATTTGTTCAAGGGAATTCACGcgtatttattatcttaatatGCACTTAAAAGTTCACTCagaaaaacaatataaatgtGAAATTTGTAACCGGAATTTCcttcatttgtattttttaaaccaacaCATTGAACTTCACAAGCCTTGTCCTCCCGGCGAAGTATTAAAGTGTCAATTTTGCCATGAAAGTTACAACGACCAATTTAGTTTACGAAACCATACTAAAACTCACAAAcaaggaaaaatttataaatgcacCGTATGCTGTTACAAAACAACAGATTCACTTGCATTAATAGAACATGCCAACGACCATACGAATAACAAATTATGTATCTGTTACCAATGTGGGCATtcatttgaaaagaaaaagtttttaagacAACACATGATTCAGAATCACATTGAAAAGAAGCAGGCATCAAAAAGAAAAcgaccaaaaataaattaa
- Protein Sequence
- MSVIEIIEISSDQDDDDASTLVDVSLEKTDDIDVQQYSDRRITKTQPQYKDANNPEIIDSQYLINKLINSNAKIINSLMEQNQLLSFTNDSISQGNDEYLKLYATRYENNIMDSLSRIKIVKIESLNVQENLTADIIDSYNDNDVQEVIPDSNRQNSSNGNTNQLNLKNIEETTNDICHRESSTVIETPIDNEFPLFKRKDLKEISNSKHQTEKISKSSLKKFNKCLPMVELDRISVSENNIISLSNAENDIIFVNNEENIIISSSNAKNTIFSSNVENNILSLNNAENDIISVSNKESNIISLRNTENVIISSSNVENTVISSSNAENDNYCRECNRFFASTKKFVYHKRYRHNGRKCYKCEKCDYASNEKSHFIRHKTTHTSEGPYQCFCCSFTFMYKNALKSHLFTHIDKNLSCDICHEKFEKANLLINHIIYYHSISPSVRTRQCKVCQELLPDRYSLKIHIETHKIGSLFKCNTCCYKATSSQNLEAHVKNHISNKIICDDCGRSIANKNKFKRHWYRMHNFFKKSRVYKCTHCHNRITYVRYDHFIRHIINIHGIEYLEQDKIDCSIKMNINNDTDTVKIEFNENSTILDPEYHETRVVDKENMEDLDETIINEPIVKDTMKFFENNLNSQVDNNFNYYSVINLYESDLNPSNKTWISRNNSLSSVNSDQASLLTDDFFISNENEHQDKSNDLLSYIKITKVESLSGRNGLWTETIDENNDEEQNIIYDIKKENFDYNDKADGSNKTIDEQNQFKKCIDMAASSTPVKNTSLANKTSVLNNDNFKNNQISLIETLISNQRQIKAEDNTNSFDNSHHISNIPKSFLPSVLLERIEVPGKVIGTSKSVAKTNETKLTEVSFESETNKPVDSEKLLKNNKPRRRIGKLPCKECGYLALSKSYLNLHMRKHSDEKPIQCPECPFRTSYKSSLTPHMRRYHPDQIVACKPRDSKLTTANHLKKSMRIHTEKDPITCDICKKTFRKLSYLKRHMICHSDERPYECNICHFKFKRAYDLTSHLGTHIVTHTEKHTEKHQCKICSREFTRIYYLNMHLKVHSEKQYKCEICNRNFLHLYFLNQHIELHKPCPPGEVLKCQFCHESYNDQFSLRNHTKTHKQGKIYKCTVCCYKTTDSLALIEHANDHTNNKLCICYQCGHSFEKKKFLRQHMIQNHIEKKQASKRKRPKIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -