Mdem001231.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Microplitis demolitor
Gene Symbol
-
Assembly
GCA_000572035.2
Location
NW:1078925-1082911[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00097 0.07 13.0 0.2 3 23 365 387 363 387 0.94
2 10 0.0064 0.46 10.4 2.7 1 23 393 417 393 417 0.98
3 10 5.8e-05 0.0042 16.8 0.4 1 23 423 447 423 447 0.96
4 10 0.0005 0.035 13.9 0.2 3 23 455 477 454 477 0.92
5 10 0.0081 0.58 10.1 3.1 1 21 484 506 484 508 0.92
6 10 0.0002 0.014 15.1 0.5 2 23 516 539 515 539 0.95
7 10 9.6e-05 0.0068 16.2 1.0 1 23 545 569 545 569 0.93
8 10 0.00022 0.016 15.0 1.2 1 23 575 599 575 599 0.96
9 10 3.2e-05 0.0023 17.7 0.6 1 23 605 627 605 627 0.99
10 10 0.0026 0.19 11.6 0.8 1 23 710 735 710 735 0.96

Sequence Information

Coding Sequence
ATGGATCCAATAAAGTGTGGGCAGCTTGAGGGAGTCGACAGGTACCTGGGCGACGAGCTGCCTCACGGGTTCTTGGAAAAGGATCCCGACACGCTATCAATAGACATCGACTTGTCGGACAAAAAACTCAATCTGGGTTACGACCCGATTTTGCAGGAATTGGAGAGTGAAAAGTTGCTGGAAGTTTGTGAGAAAGACGGTTTTATAATGCCGGAGTTCCAGCTTGATAAGCTGGATCCCATGACACTTGCGCCCAATGACATGATGGTCGCTGGTGAAATACTTCCGTCAACCAGCATCAATAATTCATCAACGCTTGCTATCAATGGACACCAGGATATTTATTCTGGTGACATTAAAAAGGCTAGTGGTGGAGACACTGATGACATTTGCGATGAATCATCTCAAGTTTATGATTTACAAAACAAGtttgatgatgacgatgaggCTAATGTTGacaatattgttaatattattaacgaAAGTGATTTGAACAACTACGATGATGGTAATCAAGATGAcattaatgatgatgatgatgatgatgatgataataatgaagtaTTTGATGAAATCAATTCCGTGAGTACGGTATCGATTGATGCAGCAGATACGTCACTTTCTGCTGCTGATAATTTGCTGGAAAAAACTAAAGCTGCGAGCATACTGATGTCTAAGCGCCACAAAGTACCTGAACAACTGGACGATGGTAATGTACATGACCAGGTTGTAGAACAAGAGCAAGGGGGtcagagtaaaaataaagatgaaaTTATGGCTGTGGTTGCCATTTCAACAGACAAACGTTCCAATATGACgcaaattgttataaatactGGCAAAGGCGAACAAATATATCGGGGTAAAACGTCTGAATTGATGGAAGCTACtggttatttttcgaaaaattcaaatattaaaacagCGTTGACTAATATTAATACGGAAACAATTAATAGTTGTACGGAAGTGAACGGATCGTATTCGTTGAGTAATCAAGAAGCTGTTATATCAAAAGCACTCGAGGAGCTGGGGTACAGTGAAGATAATTTGGTCTCGGTGACACTGCCTGATAATGGTAAAATGTGGATATGTCCACGTGATGATTGTCACAGAGAATTTAATCGTCTGTACGCATTGAAAGGTCATATTTTAGCTCATTACGGTGTTCGTCCATTCAAGtgtgatTATGAAGGATGCACATGGGCTTTTCATTcagaattcaaattaaagcgcCATAAAGAAACTCATTTGAAGCGTAAAGATTATGTGTGTCAAGTTGAAGGCTGTAATAAACGTTTTACGACCGTCTACAATTTGTGGACACATGAAAAATTACACACAAGACCCAATCGGATCGCTTGCCAGGTTCCTGAGTGTGAGGAAAAATTCCAGACCAAGCGAGCGCTGGAGTTACACATGAAAACACATGACCAGAGTCACGCGCCTTATGTGTGCATGCACGAAGGCTGCGGTAAACGTTACTACAGCAGCAACGCGCTTACATCTCACCAGCGGTGCCACAGTTACAAGGAAATAGACATCAAGTGCTCGTGGCCAGGTTGCGGGAAGATATTTGATAAGCCGTGTCGGCTCAAAGCGCACTTGCGATCTCATACTGGATCCAAACCGTATCTGTGCACGTTTGCTGGGTGCTCATGGGCATTCACGTCATCCAGTAAACTCAAGAGACATGAGAAGAAACACACCAAtgaaaggaaatttatttgCGATGTCACAGGATGCAGCAAAGCTTTCATGCGCTCGGAACATTTGAAGGAACACAAACTTACACACTCCGAGGGACGTTATTTTCAGTGTTACATTTGCGAAGCGAGCTTTTCAGCTAAGAGTAGTTTGTATgtacatattaaaaaacatcagaataaaataataacagagtCTGCTACTGATAGTATTCAATCGCTGGGCACCAGACTGACGTTTACTGAAGGAGATAatttagataacttttgtAATGGATTGCCAATGGACTTGGAGTCGGAGATTGTGAATAATAATCAGCTGCAGGAGTCATTTATTGCTGAAAATCTTGTCAATTCTACAAGCAGTGGTGCGCTGGTTGATAAGACGGttgttaatgaaataataacagcaaaaccaaaattttcttgtcctATTGAGAATTGCTCGCGAACTTACATGAAAAAAGTATCACTAAAATcacatattattaaatttcatgggTACTGTATTGAAGAAAATGAATTAAGTCAATCATCTGAAACTGACTATGTTTTGTATGCTAATAATTTGAACAATACTTTGAAGACAACGCGGTGTATTAACGTCAATGGGGAAGGTGATATTGAAATAGTTGATACAGTATCAGAATTATCGAGTTTACCAGAACCTAAGCCACCaccaaatgataaattattgaaacatATTAATAATCGTGCTAAAGATGTTAGTAATCATGGGTCTGCAAGAACTGGACTGACGTATGCTGacatttggaaaataaaaagtgaaaaaaatttaacattcaaTGACCCAATTATTGGACCGTCTGATGTCGTACTTGGGACAGCAGATCTAGCTGATGGTCTTTTACTGCCAGATGAATTACCCTCGATGTATTATCACGATGACATGGCTGGTAGTGagtgtcaaattttattacttgactCCACTACCACGGACTCAGAGACTACTGCATACTAA
Protein Sequence
MDPIKCGQLEGVDRYLGDELPHGFLEKDPDTLSIDIDLSDKKLNLGYDPILQELESEKLLEVCEKDGFIMPEFQLDKLDPMTLAPNDMMVAGEILPSTSINNSSTLAINGHQDIYSGDIKKASGGDTDDICDESSQVYDLQNKFDDDDEANVDNIVNIINESDLNNYDDGNQDDINDDDDDDDDNNEVFDEINSVSTVSIDAADTSLSAADNLLEKTKAASILMSKRHKVPEQLDDGNVHDQVVEQEQGGQSKNKDEIMAVVAISTDKRSNMTQIVINTGKGEQIYRGKTSELMEATGYFSKNSNIKTALTNINTETINSCTEVNGSYSLSNQEAVISKALEELGYSEDNLVSVTLPDNGKMWICPRDDCHREFNRLYALKGHILAHYGVRPFKCDYEGCTWAFHSEFKLKRHKETHLKRKDYVCQVEGCNKRFTTVYNLWTHEKLHTRPNRIACQVPECEEKFQTKRALELHMKTHDQSHAPYVCMHEGCGKRYYSSNALTSHQRCHSYKEIDIKCSWPGCGKIFDKPCRLKAHLRSHTGSKPYLCTFAGCSWAFTSSSKLKRHEKKHTNERKFICDVTGCSKAFMRSEHLKEHKLTHSEGRYFQCYICEASFSAKSSLYVHIKKHQNKIITESATDSIQSLGTRLTFTEGDNLDNFCNGLPMDLESEIVNNNQLQESFIAENLVNSTSSGALVDKTVVNEIITAKPKFSCPIENCSRTYMKKVSLKSHIIKFHGYCIEENELSQSSETDYVLYANNLNNTLKTTRCINVNGEGDIEIVDTVSELSSLPEPKPPPNDKLLKHINNRAKDVSNHGSARTGLTYADIWKIKSEKNLTFNDPIIGPSDVVLGTADLADGLLLPDELPSMYYHDDMAGSECQILLLDSTTTDSETTAY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01005512;
90% Identity
iTF_01006537;
80% Identity
-