Mdem001602.1
Basic Information
- Insect
- Microplitis demolitor
- Gene Symbol
- Prdm15
- Assembly
- GCA_000572035.2
- Location
- NW:1183111-1194633[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.016 1.2 9.1 0.3 1 23 219 241 219 241 0.98 2 17 0.00078 0.056 13.3 0.2 1 23 246 268 246 268 0.98 3 17 0.0063 0.45 10.4 1.5 1 23 362 384 362 384 0.96 4 17 7.3e-05 0.0052 16.5 0.4 3 23 390 411 388 411 0.94 5 17 0.00011 0.0077 16.0 3.7 2 23 421 443 421 443 0.97 6 17 0.0001 0.0072 16.1 2.7 1 23 799 821 799 821 0.98 7 17 0.00042 0.03 14.2 2.4 1 23 825 847 825 847 0.98 8 17 0.00017 0.012 15.4 3.4 1 23 852 874 852 874 0.96 9 17 0.00033 0.023 14.5 3.6 1 23 924 946 924 946 0.97 10 17 0.00097 0.069 13.0 1.4 1 23 951 973 951 973 0.97 11 17 0.00012 0.0087 15.8 2.2 1 23 1026 1048 1026 1048 0.98 12 17 0.00016 0.011 15.5 1.0 2 23 1056 1077 1055 1077 0.97 13 17 1.2e-06 8.6e-05 22.1 2.1 1 23 1088 1110 1088 1110 0.96 14 17 0.00042 0.03 14.1 1.3 1 23 1116 1138 1116 1138 0.97 15 17 0.00019 0.014 15.2 0.7 1 23 1144 1166 1144 1166 0.98 16 17 5.8e-06 0.00041 20.0 2.0 1 23 1172 1194 1172 1194 0.96 17 17 0.0001 0.0074 16.1 0.3 1 22 1200 1221 1200 1221 0.96
Sequence Information
- Coding Sequence
- ATGGAATATAAAGTGTCAAACCTTCTAGTTAATATTGACAATATTTGTCGCGTATGTTTGACTGAAAATGCGAATTCATTATCGATATTTTGTCAAAATGAAACGGATGAAAAGTATCGagatcttttaaataaaattcaagagtCCGGTGGGATTAAAATCGCCGAAGATGATGGCTTACCGACACTTATATGTTCCAAgtgtattaataatataaatatcgcTTTTAAAATACGCCAACAATGCCAACGCAGTGACACATTGTTAcgattatattataaaaaacttaaagagTCTAACCTCAAaACCATACATTATCAGGAAACGCTTCAACCCGAGCTGATACCCCACGAAATTTCACAATCCAGCCAGGACTTGTTCAATTACTTGGAAATCCAGAGTATGGACGCCGAGGAAGTTGTCGTTGGTCAAGAAGAAGTACCTAGTGTCGAAAGCGCTGAGATGACTGACGACGAACCGCCGTCATATAAACTAAAGTTGCAGTTACTCGAGATCGGCAGCACAGCCAGTAATTCATCAATCGTTAATTCTCAAAATTCGCGTCCGCCAAAAACTCAAAACAAAGTTTACCCAGAGCATCTAGGTGCTTTCGAAGCTCTAGCCTTCGATCCGAACCAGTCAAGTGGTAAAAAGTACACGTGTTCAATATGCGCACAGGGATTCGCTTCACTTAAGATATTGAGACAGCATCGAAAAGTTCACAAAGACGAATTGTATGTTTGTAAAATATGTCCAGTACGCTGTGCCAAGGCAGAAGAATTAGCGATGCATCTTAAGTCACATCAGCTGACCCAAGAAGCTGTTGCTgctatacaaataaataatcataataatccaGACGACTACGGTGACTACGATATGATCGACGATCAGCAGGAAATAGATCGATATAATGAGCAGTTACTGAGAGATGACAATTCTGACGGAACAAGTTACAAAGCCGgaagtaaaagaaatttatcggATGGCTATAAGATGGATctttcatctaaaaaattattattaccgaGTAATAGTAATGATAGTAGTAATCatagtaatagtagtaataatggTATTATACATAGGTGTGAAATTTGCGGTCAAacgtttttaaaagaaaaaggatTAATGCGACATCGCGCTTATCACGAATCACGAGTTATTTGTGATATTTGTGGTAAAGTTTGTTCCAATCAAAATTGGCTTGAATCACACAAAAAATTAGCCCACAGTGGTAATACTAAGTCTGAAACAAATACTTGttcttattgtaaaaaaacattttacttTAGCGCTCATTTAATGTCACATTTAAAAAGAGTACATAGAGCTTTTAGTccgAATAGtatcataATGAGCGAGTGTTACCTGGATTTTGATAGAGTTTGTAGAATATGTTTAACAGAGTCACAACCTTTAACATCATTGTTTTGTAATGATTCAGTACCAGGTGTTTTTCCAAGTTTATCACAAAGAATATCAGCATGTGGAGCTATTGAAATAAACGAGAGAGACGGATTGCCATCATCAATATGTGACAGTTGTATTTACAAAGCAAGTGTGGCACATGAATTTCGTGAACAGTGTCAGAATTCTGATGCGCGATTACGTCTCTGTTACGACAAACCAACTCGCTTACAAtcaaatTTTCAGGACTCAAGCACTCAAACAGAAACCGAAGAGAGAGCAATGgctaaaaatgttaattcaaattattttgttaaagaaGAAATCCAAGGATTAAGtcaagatttaaattcaatagtttatCATCAGAATCCACAAGTTGATGTAACAGACAATCAAATAGTCTctgaagataaattatttctttgtaaTATTGGGTACCAGGCTAAAGAATTGGAAAAGGAATCAGCGATGACTCAAGACTCTGTTCATCATCAAGACTCTGCTCATCATCAAGACTCTGCTCATCACCAGGAGTCTACTCATCATCAAGAACAGCACCAGATTGAACATCAGGAATTACAGCATCAAGTTCTAGTTCCAGAGTCGCAGCACGTGTCCATCCAAGTCGCGATGGAAACTGAAGATTTGACGGAAAATGTCAGCACGATAAGCGAAATAAAACCTGCTGCCACAGAGTACATCACTGATGAATTACTGACAAATGATGAGACTGGTAACGAAGACGAAGAATTGGAAGACGATGACGAGGAGACTGATGCCCACGTTGCCGAGTTTGAAAAAGAACAAGACATTTCAATAGAATTAGAAGAACACAAGTGGACTGGAGAGATTGAGGAGCCGGCACCCAGCAAAAGGTTGACGCGCAAAGCTAAAGACATTGCGGGAAAATCCTACAGCGTTGATGAACTTGATGAAGATTTGCctgataataatgacaatgacGATGACGACGAGCCTAAATTCAAATGTAAAGTTTGTTCCAAACGTTACAATACGCAGAAgggtttaaaaaatcattctcAAGTTCATGATAAAAAGCACAAATGTTCTGTATGTTTTAAGTCATTTtacaatattgaaaatatggaAAAACATGCGAAAGTTCACGATTCAAAGCCTCATGCGTGCCAACTCTGCCACACGTCTTTTACAAAACCCCAGAGTTTAGTCCGGCATTTAAAAATCCACTCGGAAAAATTTCAGggcagtaataataataatttaaagaacaATGACAATGGCACAGTATCAATAGTAAGGACTGAAGATACCGAAGACGATGACGATGGCTCTCAGACAAATGAAACAGACGAATTTGACAGTGCGCCTGGTTTGTACAAATGCGGTGAATGCAATCAATTTTGTtccacattaaaaaatttaaaaagacacTCATTGATACACggtgacaaaaaatattcatgtacggtttgtaaaaaatggtttttccGACCAGACACGTTGAAAAAACACGCCGAAAAACATGGGCATGGTTTATTAGACAATCTggttgatgaaaataaattgtatgagTCTGATGACGAGACATTTAATCGCAGCAATTCTACTACCGGTAATAATTCAAACGGGACCAATGACCCTGACAAAAAACTAGACAGTGATGAAGATGCTTCTGGTGAATACAAATGCCAGCACTGTGACAAAGTGATGGCAACTAAAAAAGGACTAAGACGTCACGTGTCAATGCACAAACCAAAAGCTGAACCAGTAACATGTGAGATTTGTAAAAAAGTGTGCGCTAGTCAGGCCAGACTTGTTCTTCATCAAAGAACTCACAATAAGCCGAAAGAAAAAGTACCGCGGGAATATCTTTGTCATATATGTAGCAAGGTATATCCGAGCAATTCCTCGCTGACTTATCACATGAGGACACACACGGGTGTTAAACCTCACGTATGTCAGACATGTAACAGCGGGTTTACAACAACCACGAGCCTTGCAAATCATATTCGCATACATACTGGCGACAAGCCCTTCGTTTGTCACGTGTGCAGTGCCGCGTTCGCCGTCAGCTCGGCCTTCAGGCGTCACTTGACGCGTCACACTGGAGAAGCTAATTATCTGTGCAAAACATGCGGCAAAGCGTTCAAGAGACTCAGTACACTCAAGGAACACACGTACACACATTCAGGAGAAAAACCTTACGTTTGTAAAACCTGCGGGGCTGCTTACAGCCACAGTGGAAGCTTGTTCGCTCATCAGAAACGCTGCCGAGCTCAGTATGGTGAGATGGTCAACTCGGAAAATAATCATTCGCATATTTCGCATCATATTAATGTTAGTAATGTGCAGACAGCGGTCAGATCGCTTGCTGTCATtggacaaatattttaa
- Protein Sequence
- MEYKVSNLLVNIDNICRVCLTENANSLSIFCQNETDEKYRDLLNKIQESGGIKIAEDDGLPTLICSKCINNINIAFKIRQQCQRSDTLLRLYYKKLKESNLKTIHYQETLQPELIPHEISQSSQDLFNYLEIQSMDAEEVVVGQEEVPSVESAEMTDDEPPSYKLKLQLLEIGSTASNSSIVNSQNSRPPKTQNKVYPEHLGAFEALAFDPNQSSGKKYTCSICAQGFASLKILRQHRKVHKDELYVCKICPVRCAKAEELAMHLKSHQLTQEAVAAIQINNHNNPDDYGDYDMIDDQQEIDRYNEQLLRDDNSDGTSYKAGSKRNLSDGYKMDLSSKKLLLPSNSNDSSNHSNSSNNGIIHRCEICGQTFLKEKGLMRHRAYHESRVICDICGKVCSNQNWLESHKKLAHSGNTKSETNTCSYCKKTFYFSAHLMSHLKRVHRAFSPNSIIMSECYLDFDRVCRICLTESQPLTSLFCNDSVPGVFPSLSQRISACGAIEINERDGLPSSICDSCIYKASVAHEFREQCQNSDARLRLCYDKPTRLQSNFQDSSTQTETEERAMAKNVNSNYFVKEEIQGLSQDLNSIVYHQNPQVDVTDNQIVSEDKLFLCNIGYQAKELEKESAMTQDSVHHQDSAHHQDSAHHQESTHHQEQHQIEHQELQHQVLVPESQHVSIQVAMETEDLTENVSTISEIKPAATEYITDELLTNDETGNEDEELEDDDEETDAHVAEFEKEQDISIELEEHKWTGEIEEPAPSKRLTRKAKDIAGKSYSVDELDEDLPDNNDNDDDDEPKFKCKVCSKRYNTQKGLKNHSQVHDKKHKCSVCFKSFYNIENMEKHAKVHDSKPHACQLCHTSFTKPQSLVRHLKIHSEKFQGSNNNNLKNNDNGTVSIVRTEDTEDDDDGSQTNETDEFDSAPGLYKCGECNQFCSTLKNLKRHSLIHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDENKLYESDDETFNRSNSTTGNNSNGTNDPDKKLDSDEDASGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICKKVCASQARLVLHQRTHNKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCQTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVNSENNHSHISHHINVSNVQTAVRSLAVIGQIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -