Basic Information

Gene Symbol
ct
Assembly
GCA_000572035.2
Location
NW:412029-493238[+]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 8.9e-28 3.3e-24 84.0 0.0 2 72 538 609 537 614 0.95
2 3 1.9e-32 7.1e-29 99.0 0.0 3 77 948 1023 946 1025 0.96
3 3 8.6e-31 3.2e-27 93.7 0.0 3 75 1174 1247 1172 1251 0.95

Sequence Information

Coding Sequence
ATGCAGGCCTCGGCTGCAGAGGCCAATTCTTTGGATCTGCAAGCGATGCAGTCTATGGACTGGTTGTTTAAGAAGGAGAGGATTTATCTACTTGCTCAATTCTGGCAACAGAGGGCGACATTAGCAGAAAAAGAATTAACAGCGTTAAAAGAAAAGTACGCGGCGAGTGATAATTCAAAGACTGAGGGACAGTTGCCCCAAAATGCATTACCCAGTACTGAGCATAATTCCACTGAAAGTAATTCAAGGAGATCACCGAACAACCTGGATAACGAGCTACAGGCCAAAGAAAaagagATTAACCAATTGGTAGAAGAAGTAACGAGGTTACAACAAAACTTACAAAGACTTCAAGAAACAAGTGCTGCGACCACAGCACGGCTTGAAGAAGAGCTCGAGTCCCGACGACAGCAAATCAACCGACTGGAAGCAAAGCTTGACCGGCAGCGTGACTACGATGATCTTAAGCGCGAAATAAGTGTTCTGCGTTCGGTTGATCTCTCACAGATTCCCACGGGGGAACCGGGCAAGAGTCTCGAACACTTGCTGATGGAGCGAAGCAAAGCTCTCCAGCAGGCCGAGACCTTAAAGCCGTCGACTACACCTGATACCGTCGGTGGACTCGCTTCGCCCCTGCATCGCGCCTCGACCGCGTCACCCCACGTCACGGGAGGTGTTGGTATTGGTAGTGTTAGTGGTGGAAGAAGTACAACACCTGCATCCATAACTGGAACCCATCCATCGACCACATCAACATCAACTCGCCTAACTCCAACGCCAACTGGCGCCCAAAGTATCCTATTTCCACCACCGCTCCAAAATGTTGAGACCTTTGGTTCATTTTTGGGCGAAGAGATCGTTGCCAATTGGCGTCGATCTCTCGAACGTTCGATAATGAGCCAGCAAACAAATTCCTCGACCTTAACCTCGACCACATCGACCTCTGTGGCCGTACAATCCTTAAATATTCAGCAGAGTACCCAATCCACCATTGGCGCCCAACCAATAGCTACAATAGCATCTACACAAGTTAATAACGCAGCAATACAATCATCAAATCATCATCTACCGTCTCCGTCAACAGATCCAGTATCATCAGCATCAACGACGTCAACATCCACCTCGATCAACCCAGCGCCAGCTAAGTCAGTAACTCCAATCACCAGCTGTGTTATTGATGCGTCTGAAAAAGCTCCAACGCCCATTCCGGGTCACGAGACTCCAGCTCCACCGACACCCACTTCAACAGGTGCACTGACATCTCCATCAAGTCTTATGCAGCCTTCAGCAATCTTAGAAGGCAACAGCATCAGTAGTCTCAGTCAAATGAATGGCTCATTGATCATGGCGCCCAAGAGTCCCGATGAGTGtcacaacaacaataataacaacagcCATCATCTGACAAACAATAACAGTATTGGACTGAGTGTCCTTGACACACTTAAGTCACCATTTAGGTTTGATGATCGTAACCATCCGTTCCGATTCGGCGACGAGTTTGGGGCTGCAGGCATGGCTGGCCGTCTTGGAGAATCTTTAATACCAAAAGGTGATCCCATGGAGGCACGTCTCCAAGAAATGCTGAGATACAATATGGACAAGTATGCCAGCCAAAACTTGGACACTCTACATATCGCAAGACGAGTGCGCGAGTTGCTGTCAATACACAATATTGGGCAGCGATTATTTGCCAAATACGTACTGGGTCTTAGTCAAGGAACCGTTAGTGAGTTACTGAGTAAACCTAAACCTTGGGATAAACTTACGGAGAAGGGACGTGACAGCTATCGTAAAATGCACGGATGGGCATGCGATGAGAATGCCGTACTGCTACTCAAGTCCTTGATACCCAAGAAAGATTATGTTTCAGGGAAAGAACAAGGAATCCCAGCATTCGCACGTGGGCCAACGGAGGGTGCGCCGACGGACATTAATGACGAGCGAATTGCCCATATGCTCAATGAGTCGAGTCAGCATCTACAACATCTGTCACGTGAGCACGATACCTCGAATGACGCTGACAGTAAGAGTCCTAGTCGATTAGGATGCCCGAGTCCCTTCGGCAAAGACAGGTACGACAGCCAGAATCGTCGAATCAAAAAGTACGAAAATGATGACATTCCCCAAGAAAAAGTTGTGAGGATTTACCAAGAGGAGCTGGCTAAATTGATGGGTCGTCGTGTTGATGATCTGCGCGGACCACGTGATTTCGCGCCCAGTGCGAtgttttcacattttttcaGCGCGAACCAGGGTCTCCAGGGTATGGAACGCACCCAAGATGACATTAGAATGGCCTTGGATGCGTACCACCGTGAGCTGCAGAAGCTCAACGCCGCACCTGGTCAAAATGCCACGCTGACGGGCATCCCTGGTCTGCCAACACTCCCAGGTCTTCTGGCTCTTCACCAGCAAGCGCTCCACCAAAACCACCTGTCATCCAATGGGGCAGGAGTCCAAGACCTGAGTCTTGGCAAAGTAGACTCACGTACTAAGCTAATGAATGGAGTCTCAGAGGAGGAGAAAGAGAAGATGGAGGAAGCAATGCGGCATGCGGGCAGCGCGTTTTCTCTTGTCCGACCTAAACAGGAACCTGGGACTCAATCAACTCCTGGGGGATCTAGTGCCAGCTCACCGCTTGGCAATTCTATTCTTCCACCAGCAATCAATCCAAGTGAGGAATTTGCTGGTGCAGCAGCTGCGAGTCCTCTACAGCGAATGGCATCGATCACCAACAGTCTGATCAGCCAACCGTCCACCCAGACCCACCATTCATCAAACCAGCGGCCGTTGAAAGCCGTCTTGCCACCAATAACGCAGCAGCAATTTGATCTTTACAATAATCTTAATACCGAGGATATTGTTAAGAGGGTTAAGGAGCAATTGTCACAGTATTCCATATCACAGAGATTGTTTGGCGAGTCCGTTTTAGGACTGAGTCAAGGATCAGTCTCTGACCTTCTCGCTCGACCAAAACCCTGGCACATGCTAACCCAGAAAGGCCGTGAGCCTTTCATACGCATGAAGATGTTTTTGGAAGATGAACAGGCAGTCCATAAGCTCGTCGCAAGCCAATACAAGATAGCACCAGAGAAATTGATGAGGACTGGTGGCTACGGCGGCCTGCCTCGTAAGTTTAACTCAGCTTGTGGAACGCCAATGAAGCCGATGCCACCGACTAAGCTGGTGCAGGAACAACTGCAGAATGCTGCCAAGGCCCAGGCAGCGGCAGCGGCTCAAGCTGCGGCCCAAGCAGCAGCTCAGGCAGCTCAGCATGAGCAGCAGATGCAGTTGGGACCACCACCGAATCAACAACATCCTCAACCACCTCCGCCAATGATGCTGACGCCTACGAGTCATCATCCGCATGTCCAGCTGACTATGGAGCTGCAGAAGAAGCAAGTGGctcagcagcaacagcaaatGGGTCTGCACTCACCACATCAAATGACTTCGCCTCTACGCAGTCTCCATCCACACATATCTCCAAGTGTCTACGAAATGGCAGCGCTTACCCAGGACTTGGACACACAGACCATTACTACTAAAATTAAGGAAGCGTTGCTAGCTAATAATATTGGTCAGAAGATCTTTGGTGAAGCCGTACTAGGTCTTTCCCAAGGCTCGGTCAGTGAGTTGCTCAGTAAACCAAAGCCTTGGCACATGCTGAGTATCAAGGGTCGCGAGCCTTTCATACGCATGCAACTTTGGCTCTCGGATGCTCACAATGTCGACAGACTCCAAGCACTGAAAAACGAGAGACGCGAGGCCAACAAACGAAGACGCAGCAGTGGACCAGGACACGACAACAGCTCTGACACATCCAGTAATGATACTGCTGAGTTCTATCACGCAGCGTCACCTGGACCAGGCCCACCATCAGCTAAAAAGCAACGAGTCTTGTTTTCCGAAGAGCAGAAGGAAGCTCTTAGACTGGCCTTCGCATTAGATCCATACCCCAATGTTGCAACTATCGAATTCCTTGCCGGAGAGCTGGCGCTCTCGTCTAGGACCATCACCAACTGGTTCCACAATCACAGAATGCGTTTGAAGCAGCAGACGCCTCACGGACAACCAGAGCCTCAGTCGCCACGTGAACCTGGACAGCCTTTTGACCCGGTTCAATTCCGCCTACTTCTCAACCAAAGACTCCTCGAGATCCAAAAGGATCGACTGGGACTCGGGAACATGCCCATACCTTACTCCCCGTACTTTAACCCAAATCTGGCCACTCTGATGACCAATGCCCTCAAGGAACAGTGTTCCGGATTAGATCTATCCATGGGTTCGTTGAAACGCGAACCAAATCCAGAGTACGAGGACGATGACGGAGATGACGGAATGAGCAACGTTGGCAGTGAGGACTCGGACGCTTCCGCGGGCAGCATAAAACGCGAACCTGATCTCAACCAACCACCTAGCACTCCCGCAACCGGTCGATCCAGCCGTCGCAAGCCTGCAGCACCCCAGTGGGTAAACCCCGAGTGGCAGGAACCTGCGCGCACTGGAGACGAGGTGATAATAAATGGCGTTTGCGTCATGAAGACCGATGACTATGGAGTAAAAAGAGAGACCGAGGAGACTGTCCGCGTCGAGCCGACCCCCGTTCAGGACCGCTACGACGACGACGCAGCTTCCGAGGCATCCTCAGTCTCAGCTAACGCGCCCGAACGCGATGTCCCGACTCCTAGCCCTAGTCTCAAGTCCGGGCAGAACTCCCCGACTCAGTCTCCGCGACCGTTAGAGGTTAGCGCCGACAGTCCCAAAGAAGTTAAACACGAACCGGAAGAGACGTGGGACTACTAG
Protein Sequence
MQASAAEANSLDLQAMQSMDWLFKKERIYLLAQFWQQRATLAEKELTALKEKYAASDNSKTEGQLPQNALPSTEHNSTESNSRRSPNNLDNELQAKEKEINQLVEEVTRLQQNLQRLQETSAATTARLEEELESRRQQINRLEAKLDRQRDYDDLKREISVLRSVDLSQIPTGEPGKSLEHLLMERSKALQQAETLKPSTTPDTVGGLASPLHRASTASPHVTGGVGIGSVSGGRSTTPASITGTHPSTTSTSTRLTPTPTGAQSILFPPPLQNVETFGSFLGEEIVANWRRSLERSIMSQQTNSSTLTSTTSTSVAVQSLNIQQSTQSTIGAQPIATIASTQVNNAAIQSSNHHLPSPSTDPVSSASTTSTSTSINPAPAKSVTPITSCVIDASEKAPTPIPGHETPAPPTPTSTGALTSPSSLMQPSAILEGNSISSLSQMNGSLIMAPKSPDECHNNNNNNSHHLTNNNSIGLSVLDTLKSPFRFDDRNHPFRFGDEFGAAGMAGRLGESLIPKGDPMEARLQEMLRYNMDKYASQNLDTLHIARRVRELLSIHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHGWACDENAVLLLKSLIPKKDYVSGKEQGIPAFARGPTEGAPTDINDERIAHMLNESSQHLQHLSREHDTSNDADSKSPSRLGCPSPFGKDRYDSQNRRIKKYENDDIPQEKVVRIYQEELAKLMGRRVDDLRGPRDFAPSAMFSHFFSANQGLQGMERTQDDIRMALDAYHRELQKLNAAPGQNATLTGIPGLPTLPGLLALHQQALHQNHLSSNGAGVQDLSLGKVDSRTKLMNGVSEEEKEKMEEAMRHAGSAFSLVRPKQEPGTQSTPGGSSASSPLGNSILPPAINPSEEFAGAAAASPLQRMASITNSLISQPSTQTHHSSNQRPLKAVLPPITQQQFDLYNNLNTEDIVKRVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDEQAVHKLVASQYKIAPEKLMRTGGYGGLPRKFNSACGTPMKPMPPTKLVQEQLQNAAKAQAAAAAQAAAQAAAQAAQHEQQMQLGPPPNQQHPQPPPPMMLTPTSHHPHVQLTMELQKKQVAQQQQQMGLHSPHQMTSPLRSLHPHISPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNVDRLQALKNERREANKRRRSSGPGHDNSSDTSSNDTAEFYHAASPGPGPPSAKKQRVLFSEEQKEALRLAFALDPYPNVATIEFLAGELALSSRTITNWFHNHRMRLKQQTPHGQPEPQSPREPGQPFDPVQFRLLLNQRLLEIQKDRLGLGNMPIPYSPYFNPNLATLMTNALKEQCSGLDLSMGSLKREPNPEYEDDDGDDGMSNVGSEDSDASAGSIKREPDLNQPPSTPATGRSSRRKPAAPQWVNPEWQEPARTGDEVIINGVCVMKTDDYGVKRETEETVRVEPTPVQDRYDDDAASEASSVSANAPERDVPTPSPSLKSGQNSPTQSPRPLEVSADSPKEVKHEPEETWDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2