Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00023 0.026 15.8 0.5 2 23 51 72 50 72 0.96

2 6 0.00083 0.095 14.0 3.9 1 23 78 101 78 101 0.93

3 6 0.00037 0.042 15.2 0.1 3 23 106 127 104 127 0.94

4 6 0.00026 0.03 15.6 0.1 3 21 137 155 135 156 0.92

5 6 3.1e-05 0.0035 18.5 0.8 1 23 164 186 164 186 0.96

6 6 6.6e-06 0.00076 20.6 0.4 1 23 192 214 192 214 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00023	0.026	15.8	0.5	2	23	51	72	50	72	0.96
2	6	0.00083	0.095	14.0	3.9	1	23	78	101	78	101	0.93
3	6	0.00037	0.042	15.2	0.1	3	23	106	127	104	127	0.94
4	6	0.00026	0.03	15.6	0.1	3	21	137	155	135	156	0.92
5	6	3.1e-05	0.0035	18.5	0.8	1	23	164	186	164	186	0.96
6	6	6.6e-06	0.00076	20.6	0.4	1	23	192	214	192	214	0.98

Coding Sequence: ATGGCCGAATGTAAAAGCAATGAGATGTGTAGTAAGGGATTTACTTTGCTATCTTACGATATATATAATCGCAATATTGTTTTAGAGTCCAACTCTCCTGCTACTGAGTTAGCAGAGGAGCATGCAACCAATAAACTAAGTACCAAGCTCAATTGTCCGATTTGTAAAAGGATTTTGACATCCGCAACTGGATATACTAAACATTTAAAGAGACATGAATCCCCCGGTGGATATCGTTGCACTTATTGTGAGGAACGTTTCTGTTTATATGATTTACTTAAGAAGCACAGAGATGAGACACACAAAGTGTTGGCCTGTCGCATATGTCAGGAGACGTTTGTAACACCGCAAGCTTATCGCGAGCATATTAAGGACGTTCATGACGGAGTCGACCGCCTTATGACTATCTGTGAGAAATGTGGCATGTCCTTTAAGACCCCACAGGCGGCCAAAAGGCATCTGGACACGATGTGCGGCAAGATAAAGCCCCATGCCTGTGATGAGTGTGAAATGGCATTCTACACTAAGTACAATCTTGCGGACCACAAGAAAATCCATCGTGGACAGAATGAATTTTATTGTAGCTATTGCGGAAAGGGTTTTATAAGCAATGCTAGACTAGTGATACACGAAAGAAGGCACACTGGAGAGAAGCCATATAAATGTGATGTAAGTTACTTTTGA
Protein Sequence: MAECKSNEMCSKGFTLLSYDIYNRNIVLESNSPATELAEEHATNKLSTKLNCPICKRILTSATGYTKHLKRHESPGGYRCTYCEERFCLYDLLKKHRDETHKVLACRICQETFVTPQAYREHIKDVHDGVDRLMTICEKCGMSFKTPQAAKRHLDTMCGKIKPHACDECEMAFYTKYNLADHKKIHRGQNEFYCSYCGKGFISNARLVIHERRHTGEKPYKCDVSYF

Sequence clustering based on sequence similarity using MMseqs2