Mmyr028430.1
Basic Information
- Insect
- Microdon myrmicae
- Gene Symbol
- -
- Assembly
- GCA_963931805.1
- Location
- OZ007502.1:68456015-68459414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00077 0.088 14.1 0.7 1 23 148 171 148 171 0.95 2 12 0.73 83 4.8 0.9 2 23 309 329 308 329 0.90 3 12 0.01 1.2 10.6 4.3 1 23 335 358 335 358 0.97 4 12 6.6 7.6e+02 1.8 0.1 2 9 365 372 364 388 0.82 5 12 5.4 6.2e+02 2.0 0.8 2 23 391 412 390 412 0.90 6 12 0.00019 0.022 16.0 1.9 1 23 418 440 418 440 0.95 7 12 9.7e-09 1.1e-06 29.6 0.6 3 23 452 472 450 472 0.97 8 12 0.00038 0.043 15.1 3.0 1 23 479 501 479 501 0.98 9 12 1.8e-05 0.0021 19.2 0.5 2 23 507 528 506 528 0.96 10 12 0.00041 0.047 15.0 1.2 1 20 534 553 534 556 0.93 11 12 0.002 0.23 12.8 0.2 2 19 562 579 561 581 0.95 12 12 2.3e-05 0.0026 18.9 0.4 1 23 588 611 588 611 0.98
Sequence Information
- Coding Sequence
- ATGTGTGAGGTGTTACCGATTTGTAGAGTATGCTTGAAAACCTCACTAGAATATATTGATTTGGATACGCCGTTTGAGGACGATACGGAATATGAAGGGAGAACACTTACTTATCTGGACTGCTTCTTAGCATGTACTCGACTCGAAATTAATGTAATAGAAAATAGTCCCCAAAACTTGTGCAGCTCTTGTGGCCTGGAATTAAAGATTGCTTATGAATTTCTACGAAAAGCGGAATTGGCTGACAAAACGCTGCGGGAATTCGGTACACGAATAACAGATATCAAAATTCAAGAAGAGGCACAGTTCTTAGTACACACGGAAGATGGCACGGAATATGTTCACGTTGCGGAGATTAACAGTGGCAAACAAAGCACGTACGCTAGTGGAATAGTTCTAAAGGATGATGAGGTGGAAAGGCCTTTTGTGAATgCGAAGGACTTCATTTGTTCAATATGCGATGAACAATTTATTTCACATCTTGAATTAAACCAACATttaaaagaaacacacactaatGATGCCCTTGCAAACTGCAGTCAGTTAAAGCCATTAAGCGAAATTGGCGAGGTAGACGTTCCATTAAGTGATGCCCAAAGTCACGGAAATCTGCACAAGAAATCTTCCTGTTCAAGTGAGCAAACCACTGGCAAAAGTTATGTTGACCTCATTGAAGTTGGTCAGAGCGATGAATTGGATTTGCTCGGTTCTGATTTAAGGATCATAAATTCTATGCAGTTATCGGGTGATTCTGATGCATACAGTCAAACAGATCAAGAGCAATCAGGTGATAATAATATCAATGAAGTAATTGATCTTGTGGATGATGATCAATCGAAATCTCTATCGGAATTTGAAGCATTAACGACAAAATCTAAGTTAATAAATAATGAGAGTAAAGACGCTACAAAGTCCATTTTTACACGTTGCTCAGTTTGTGATCGATATGTGAGAACATCATCAATTCAAACACACATGAGCTTTCATGCAGGTGTACGAGATTTTTCATGTGTGCATTGCTCCCAGGGCTTTCATTCAAAACGGTTTTTGCAAGCACATTTGAAGAGCGTTCATAAGGAGCATTCTAAGCTTGTGTGCAAAATATGCGGCGAACAATTGAAAGGATTAGATATGAAGACACATGTCCAAGAGCGGCATTTACGGACTATAAAGTGCACCCAATGCGAATACGAAGGTCAAGAAGTAAAAATGAAGGATCACATGAAGCGCAGGCATGCAGAATCCAAAGATTTCCTCTGCAACATATGCTCTAAAACCTTTTGTACGCTTGGAGTTCTTAATGCTCACCTTAAATACCATGAACGAAAGGAATCGAAAGTAAAGTCAGATGCATGCCCAATATGTGGGAAAGTATTTTCTACAAATCACTATCTCAAAGCTCACATGCAAACCCACCAAGACGATCGAGAACTATTCAAATGTAACAGCTGCGATAAATCATACCACTCAAAAGCGGCATTGGATAATCATACTAAAATGCATAAGGGCGATACTATTGAGTGCTTGTTGTGTTCTAAACAATTTGCGCGACAATATGAACTTAACGTTCACATGCGCTTTCATACTAGAGAATATCCTTTCGAGTGCGAACTGTGTGAGAAGAAATTCGCAATAAAGGGTCATCTACGAACACATATGTGGAGACATCAAGGACTGAAGCTACAATGCGAAGAGTGTGGTAAACTGTTTACTTCTACGAAAGCATTGCAGGAACATTCGTTTTGTCACTCTGAGATGCCCTTCCCTTGTCCGTATTGTACAAAAGCCTACCCATCCAAACCAAAATTCAAGGTTCATTTAAAAACAGTGCATATGGTCGAGTTTTCAAATGAAGAATTACAAAAGATGGGAAGGTTTAACATACAAAAGCGGCCGCGGTCGAAGAAGTTCACCCTCGTTCAAGCAGACGCTGTTATGAAGGAAGTCGAGATCCTCACGAAAGGTGAAGAAGAGCAAATATGA
- Protein Sequence
- MCEVLPICRVCLKTSLEYIDLDTPFEDDTEYEGRTLTYLDCFLACTRLEINVIENSPQNLCSSCGLELKIAYEFLRKAELADKTLREFGTRITDIKIQEEAQFLVHTEDGTEYVHVAEINSGKQSTYASGIVLKDDEVERPFVNAKDFICSICDEQFISHLELNQHLKETHTNDALANCSQLKPLSEIGEVDVPLSDAQSHGNLHKKSSCSSEQTTGKSYVDLIEVGQSDELDLLGSDLRIINSMQLSGDSDAYSQTDQEQSGDNNINEVIDLVDDDQSKSLSEFEALTTKSKLINNESKDATKSIFTRCSVCDRYVRTSSIQTHMSFHAGVRDFSCVHCSQGFHSKRFLQAHLKSVHKEHSKLVCKICGEQLKGLDMKTHVQERHLRTIKCTQCEYEGQEVKMKDHMKRRHAESKDFLCNICSKTFCTLGVLNAHLKYHERKESKVKSDACPICGKVFSTNHYLKAHMQTHQDDRELFKCNSCDKSYHSKAALDNHTKMHKGDTIECLLCSKQFARQYELNVHMRFHTREYPFECELCEKKFAIKGHLRTHMWRHQGLKLQCEECGKLFTSTKALQEHSFCHSEMPFPCPYCTKAYPSKPKFKVHLKTVHMVEFSNEELQKMGRFNIQKRPRSKKFTLVQADAVMKEVEILTKGEEEQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -